Methylophaga pinxianii: LGT42_013400
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Entry
LGT42_013400 CDS
T08312
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mpin
Methylophaga pinxianii
Brite
KEGG Orthology (KO) [BR:
mpin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mpin03016
]
LGT42_013400 (rnd)
Enzymes [BR:
mpin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LGT42_013400 (rnd)
Transfer RNA biogenesis [BR:
mpin03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LGT42_013400 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
DJC28_CD
Sec15_C
Motif
Other DBs
NCBI-ProteinID:
UPH45492
LinkDB
All DBs
Position
2792549..2793697
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AA seq
382 aa
AA seq
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MTVLYIDSEAALTQFCTEIQHSKWLAIDTEFLREKTYYPQLCLIQIANDNVIACIDPIAI
KDLTPLLDLLYQPDITLVFHAARQDLELFFLLKNSLPPNLFDTQLAATILGDGDQIGYGN
LVKQRLDVNLDKAHSRADWTQRPLSAEQLEYAADDVRYLRELYHQMSADLEKQHRTEWLK
EDFAALSDSANYIADPETIWRKIRGAGKLKGVQLAVLQQLAAWREQRAMDRDRPRRWILK
DEVMLDLARFAPEKLEKLSQIRGIEARDIERSGRAIIEVISKAKQTPAEQWPILLKPEPL
SNQQEALIDALMALLRKFCDEQSITPIAVASRKDIEKLVRGEKDLPLLQGWRNQIVGHHL
TAFIEGHLSVTADTQQIHTQEV
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgactgttctttacattgattcggaagcggctctaacacaattttgtacagaaattcag
cacagcaaatggctggcgatcgataccgaatttctgcgcgaaaaaacctattacccgcaa
ctttgtctgatccagattgccaatgacaacgttattgcatgcatcgatccgattgcgata
aaagatctcactcctttgcttgatctgctgtatcagcccgatataacactggtttttcat
gctgcacggcaggatctggaattgttttttttgttaaaaaacagtcttccccccaacctg
tttgatacacaattagcggcgacgattctcggcgatggtgatcaaatcggctatggcaat
ctggtcaaacaacgactggacgtcaacctggataaagcccattctcgtgcagattggacg
cagcgcccattaagtgcagaacaattggaatatgcagcagatgacgtacgttacctgcgt
gagttatatcatcaaatgtccgctgatctggaaaaacaacaccgtacggaatggcttaag
gaagattttgccgccctgtctgattcagctaattacattgcagacccagaaaccatttgg
cgtaaaattcgtggtgccggtaagttaaagggtgtacaactcgctgtattgcaacagtta
gctgcatggcgtgaacaacgtgcgatggacagggatcgaccaagacgttggattcttaaa
gacgaagtcatgctggatctggcacgatttgcaccggaaaagttggaaaaactcagtcaa
atccgcggtattgaggcacgcgatatcgagcgaagtggacgagccattattgaagtcatc
agtaaggcaaaacagacacctgccgagcaatggcccatattgctcaaacctgaaccatta
agtaatcagcaagaagcacttattgatgcgttgatggcattattacgtaaattctgtgat
gagcaatctattacgccaattgctgtcgccagccgtaaagatatagaaaaactggtacgt
ggtgagaaggatctgcctttattacaaggttggcgcaatcaaatcgtcgggcatcatctg
accgcatttatcgaaggtcacctatcagtcactgctgatacacaacaaattcacacacaa
gaggtatag
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