Methylophaga pinxianii: LGT42_014380
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Entry
LGT42_014380 CDS
T08312
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
mpin
Methylophaga pinxianii
Pathway
mpin03030
DNA replication
mpin03410
Base excision repair
mpin03420
Nucleotide excision repair
mpin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mpin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LGT42_014380 (polA)
03410 Base excision repair
LGT42_014380 (polA)
03420 Nucleotide excision repair
LGT42_014380 (polA)
03440 Homologous recombination
LGT42_014380 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpin03032
]
LGT42_014380 (polA)
03400 DNA repair and recombination proteins [BR:
mpin03400
]
LGT42_014380 (polA)
Enzymes [BR:
mpin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LGT42_014380 (polA)
DNA replication proteins [BR:
mpin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LGT42_014380 (polA)
DNA repair and recombination proteins [BR:
mpin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LGT42_014380 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LGT42_014380 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
WHD_BrxR
HHH_5
Motif
Other DBs
NCBI-ProteinID:
UPH45672
LinkDB
All DBs
Position
2975489..2978203
Genome browser
AA seq
904 aa
AA seq
DB search
MTQTAPLILVDGSSYLYRAYHAMPPLTNSDGESTGTIYGVINMLRKLIRDYQPEHMAVVF
DAKGKTFRNDLYAEYKATRPPMPDDLREQIAPIHEIVKAMGLPLLCIDNVEADDVIGTLA
KQATAAGIETVISTGDKDMAQLVSEHVTLVNTMNNTKTDIAAVQEKFGLTPQQIVDYLAL
MGDKVDNIPGVESVGPKTATKLLQQYGSLQGVIENAHEVKGKLGEKLRAAVDALPLSYQL
ATIKMDVELDFTPETLDMQAADNQKLAELYRRYEFKSWLQELDSAPVTATSTKTDEPAIS
NETHYETILTQQQLDNWLARLQKAELFAFDTETTSLNYLQARIVGMSFAIKAGEAAYLPL
AHDYPGAPDQLDFDNTLALMKPLLEDPKALKVGQNLKYDRHILLNHGIDLQGIAHDTMLQ
SYVLDSTATRHDMDSLAEKYLNRSTIHFEDIAGKGKKQLTFNEIGLEEASPYACEDADIT
LQLHHILWPKIQAIPSLETVYRELEMPLLPVLNTLERNGVHIDIFMLQQQSDALAHDIDR
LEKQAHESAGTKFNLGSPKQLQEILYDQQQLPVRKKTPKGQPSTAENVLQELADDGYELP
QIIMQYRSLSKLKSTYTDKLPQQVNQQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTE
TGRKIREAFVAGKGAKILAADYSQIELRIMAHLSGDKSLLTAFAQGEDIHRHTASEIFGV
EPENVTGDQRRSAKAINFGLIYGMSAHGLSKQLGIERHQAAKYMETYFERYPGVRNYMDN
TREQAKKDGYVETIFGRRLYLPEINSSNGLRRQYAERTAINAPMQGSAADIIKRAMISIH
DWLLEADTGIRMIMQVHDELVFEVPEDQLDLAKTEIEQFMIQAADLEVPLEVGIGVGDNW
EQAH
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaactgcaccacttattcttgttgatggctcttcttacctgtatcgcgcttat
catgccatgccgccactaaccaacagtgatggcgaatcaactggcaccatttatggtgtt
attaatatgttgcgtaaactgattcgggattatcaacctgaacatatggcagtggtattt
gatgccaagggtaaaaccttccgtaatgatctttatgcagagtataaagccacacgccct
cccatgcccgacgatttacgtgaacagattgcgccaattcatgaaattgtaaaagcaatg
gggttgccgctgttatgcattgataacgtggaggctgacgatgtgattggcaccctggca
aaacaagccactgccgcggggattgagacggtgatctccaccggtgacaaggatatggca
caactggttagtgagcatgtgaccctggtcaacaccatgaacaacacgaaaactgatatt
gccgccgtgcaggaaaaatttggcctgacgccacagcaaatcgtcgattatctggcactg
atgggtgacaaggtagataacattcctggtgtggaaagtgtcggcccgaaaaccgcgacg
aagttactgcagcaatatggcagtttgcaaggcgttattgaaaatgcccatgaggttaaa
ggcaagctgggggaaaaactgcgagctgctgtcgatgcattacccctgtcttatcaactg
gcaaccatcaagatggacgttgaattggatttcacaccggaaacgctggatatgcaggca
gcggataaccaaaaactggcagaactctaccgccgatacgaattcaagagctggctacag
gagttagactctgctcctgtcactgcgacgtcgacaaaaacggatgaaccagccatcagt
aatgaaacccattacgaaactatattgacccaacagcagctggataactggctggcaagg
ctgcaaaaagccgagctatttgcttttgataccgaaacgacaagtctgaattatcttcag
gctcggatagtcggtatgtcatttgccattaaagccggtgaagctgcctatctgccgctg
gcacatgattatcccggtgcaccggatcaactggattttgataacacgctggcattgatg
aaaccgttacttgaggatcccaaggcactgaaagtaggtcaaaacctcaaatatgaccgg
catattctgctcaatcatggcattgatttgcagggcattgcacatgacacaatgttgcaa
tcctatgtgctggatagcacagccactcgccatgatatggattcgctggccgaaaaatac
ctcaaccgtagcactattcattttgaagacattgccggtaaaggcaaaaaacagctgact
ttcaatgaaattggtctggaagaagcctcaccttatgcttgtgaagatgctgatatcaca
ctgcaattgcatcatattctatggccaaaaattcaggcgattccctctttggaaacggta
tatcgtgaattggaaatgcctttgctacccgtgttgaacacattggagcgcaatggcgtg
catatcgatatttttatgctgcaacagcaaagcgatgccttggcacatgatatcgatcga
ctggaaaaacaggcacatgaatctgccggtaccaaattcaatttgggttcgcctaagcaa
ttacaggaaattctctacgatcagcaacaattgccggttcgcaaaaaaacgcccaaaggg
cagccttcaaccgcagaaaatgtgctgcaggaactagcagatgatggttatgaattacct
caaatcatcatgcaatatcgtagtttaagtaagctgaaatccacttataccgataaattg
ccacaacaggtgaatcaacagactggccgtgtgcatacttcatatcatcaagcggtcacg
gctaccgggcgattatcgtcttcggatccgaatctgcagaatattccaatccggactgag
acgggtcgtaaaattcgtgaagcttttgtagccggaaaaggtgccaagatcctggccgcg
gattactctcaaattgaactgcgtatcatggcgcatttatctggtgataaaagcctgctg
accgcgtttgcccaaggtgaagatattcatcgccataccgcttctgaaatctttggggtg
gaaccggaaaacgtcactggcgatcaacgtcgcagcgcaaaagccatcaacttcggtttg
atttatggcatgtccgcccacgggctttctaaacaactcggtatcgaacgtcatcaggct
gccaaatacatggaaacctatttcgaacgttaccccggtgtcagaaactacatggacaat
acccgtgaacaggccaaaaaagatggatatgtcgaaaccatttttggacgacgtttatat
ttgccggaaatcaactccagcaacggcctgcgccgccaatatgccgaacgcactgcgatt
aacgcgccaatgcaaggcagcgctgcggatattatcaaacgcgccatgatctccatccat
gactggctgctcgaagccgataccggtattcgtatgattatgcaggtacacgatgaattg
gtctttgaagtacccgaagatcagcttgatttggctaaaaccgaaattgagcagtttatg
attcaagccgctgatctcgaagtgccgttagaagtggggattggagttggggataattgg
gaacaggcgcattaa
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