Microcystis panniformis: VL20_1823
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Entry
VL20_1823 CDS
T04037
Name
(GenBank) RNA-2'3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mpk
Microcystis panniformis
Brite
KEGG Orthology (KO) [BR:
mpk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mpk03016
]
VL20_1823
Enzymes [BR:
mpk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
VL20_1823
Transfer RNA biogenesis [BR:
mpk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
VL20_1823
Prokaryotic type
tRNA splicing ligases
VL20_1823
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Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Terminase_6N
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AKV66958
UniProt:
A0A0K1RYV6
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Position
complement(1532314..1533495)
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AA seq
393 aa
AA seq
DB search
MAYETLDISTPTPILSWAGHELGPQETQMAKNVASLPFVYKHISLMPDVHLGKGALVGSV
IATKDAVIPAAVGVDIGCGMAALKMPFTGEQLQGKLKKIRLDVEANIPVGFAENKEVDRE
VTKWPKWAEFKQIHRGVQNLEKKALKQMGSLGGGNHFIEICLDTDNQVWLMLHSGSRGIG
NQLAQCHINTAKELAKLAECKLPDLDLAYFVAGTEEFTAYWHDLQWAQEYARYNREIMMA
RFKRIVEKHLAGGKPTKPLLVVNCHHNYAEQEIHFGEEVYVTRKGAVRARETDYGIIPGS
MGAQSYIVKGKGEHNSFCSCSHGAGRLMSRNLAKKTFTLDDLIAQTQGVECRKDEGVIDE
IPGAYKPIQQVMNQQADLVEIVATLKQVMCVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggcttacgaaactctggatatttccacaccgacaccgattttatcttgggcggggcat
gaattaggaccccaagaaacccaaatggccaaaaatgttgcttccctaccttttgtttat
aaacacatttctttaatgcccgatgttcacttgggtaaaggtgctttagtcggttcggtg
attgccaccaaagatgccgtaattcctgccgccgtcggagtcgatatcggttgcggcatg
gctgccctaaaaatgcctttcaccggtgaacaattgcagggaaaacttaaaaaaattcgc
ctcgatgtggaggcgaatattcccgtcggttttgcggaaaataaagaagtggatcgggaa
gtaactaaatggccaaaatgggcggaatttaaacagattcatcgaggcgtacaaaaccta
gagaaaaaagcccttaaacaaatgggttccctgggaggtggtaatcactttatcgaaatt
tgtttagatacagacaatcaagtttggttaatgctgcattccggttctaggggtattggt
aatcaactagcccaatgtcatattaataccgccaaagagttagccaaactagcagaatgt
aaattacctgacctcgatctggcctactttgttgccggtacagaagaatttactgcctac
tggcatgacctacaatgggcccaggaatatgctcgttataatcgagaaattatgatggct
agatttaagcgcattgttgaaaaacatctagcgggaggcaaaccaactaaacccctctta
gtagttaattgtcatcacaattacgccgaacaagaaattcattttggggaggaggtttat
gtcacccgcaaaggagccgtccgcgctagagaaaccgattatggtattatcccaggctcc
atgggagcgcaatcttatattgttaaaggcaaaggagaacataatagcttctgctcctgt
tcccacggggccgggcgcttgatgtcgagaaatctggctaaaaaaacctttactcttgat
gatttaatcgcccaaacccaaggggttgaatgccgcaaagatgagggcgttattgatgag
attccgggggcctataaaccgatccaacaggtgatgaatcaacaggcggatctagtggaa
attgtcgccactctcaagcaggtgatgtgtgtcaaaggttaa
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