Entry |
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Name |
(GenBank) UvrD/REP helicase
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KO |
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Organism |
mpl Methanosphaerula palustris
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:mpl00001]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mpal_0625
03430 Mismatch repair
Mpal_0625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:mpl03400]
Mpal_0625
Enzymes [BR:mpl01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mpal_0625
DNA repair and recombination proteins [BR:mpl03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Mpal_0625
MMR (mismatch excision repair)
Other MMR factors
Mpal_0625
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SSDB |
|
Motif |
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Other DBs |
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LinkDB |
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Position |
complement(620224..623283)
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AA seq |
1019 aa
MSLNPAQQTAVENAGTQLILAGPGSGKTRVITEKILHLLDHGVPPTEILALTFSEKAAAE
MNDRIEMKRPNLDLEIHTFHSFCLEVLQDNMLSSGLNVSGGVISRTSQLVWGLQHIDIFD
FEHIKLGNNAADVIEAVIDGISAFRDELIAPDELDDYLTQKQSVQVEEAEQEYLLQLGDL
LKVYRAYEQYKRERNLIDFDDMIHGAVTLFRSDPALRSSYRSRFRYILVDEFQDTNYAQL
QLIKEIAGENLCVVGDDDQTIYRFRGAYLTNIRDFKQWAATHTETLLDQNYRNSGAVLSL
ALQVMAGAPGRREKALFTEKGDGEPVTVAACGNDAGEAEYVAAEIEKLVGTPYHSRQDGG
DRPLEYRDFTVLCRTKADGKKFQAALQRHAIPCEYQANVDFMQLPVVRDMVAYLRIIDNP
LMAAVPLNRVMKICSIPETVVQKINAAAIKRGDDDDDGVYETMQDAASIVPDHAEPVGEV
VRMLAPFIEQKERYTLPELVHAVMMQASGLYRSALTDTADMVRLYLATFHEIVLEFDRTT
PEATIPGLLQYLELLGAFPVEVVREQKEAGDAVQILTAHKSKGKEFPVVFVADLAREKFP
LRYSPKRFRVPGDLARGLRTGDDEKALFVQEERRLLYVAMTRAEERLYLTYAKWYGDNKR
ERKPSPFLEELNFRENPLITVVEPPACAPALPVTAGDPVEDLRTSLQEEVVRAVSEMRIS
TAIQTLVTLEGVREYAEQGTDDFDRDAFLAKAGSRVGADTRITTLLDPPHQSLIPPNYRF
SASALSTYQDCPLQFKFANLYRVPLPRQPQLVFGSTLHSVIEHLTRNPDPSQSLRDQGLA
LLEEYWSPEPYESKTQESEAHDSASALLDTYLAWQAGNPNTVIGVEKEFTFSFAGHSIHG
FIDRLEQTPDGNYVVIDFKSGKKPDSLTKKAVGEHIQLNLYSMAVQQMYQVLPEKAELFY
LKDGKRVSYLPTEETIQVFTGTLSTLIGGITREEFPPKSDNQRCQWCAYRPLCGTDLKG |
NT seq |
3060 nt +upstreamnt +downstreamnt
atgtccctcaaccccgcccagcagaccgccgtggagaacgccggcacccagctgatcctg
gccggcccaggctcaggcaagacccgtgtgatcaccgagaagatcctccacctcctcgac
catggcgttccccccaccgagatcctcgccctcaccttctcagagaaggccgccgccgag
atgaacgacaggatcgagatgaaacgcccgaacctcgacctggagatccacaccttccac
tccttctgcctggaggtcctccaggacaacatgctgagcagcgggctgaacgtctcgggc
ggggtgatcagccggaccagccagctcgtctgggggctgcagcatatcgacatcttcgac
tttgagcacatcaaactcgggaacaacgcggccgacgtgatcgaggcggtcatcgatggg
atcagtgcgttccgggacgaactgatcgcaccggacgagctcgacgactacctgacccaa
aaacagtcggtccaggtcgaggaggccgagcaggagtacctactgcagctcggagacctg
ctgaaggtctaccgggcctacgagcagtacaagcgggagcggaacctgatcgacttcgac
gatatgatccacggggccgtcaccctctttcgatccgacccggctctccgttcatcgtac
cggtcccggttccggtacatcctggtcgacgagttccaggacaccaactatgcccagctc
cagctgatcaaggagatcgccggcgaaaacctctgcgtcgtcggagacgacgaccagacc
atctaccggttccggggcgcctacctcaccaacatcagggacttcaagcagtgggccgcc
acccacaccgagaccctcctcgaccagaattacaggaactcaggcgcagttctctccctt
gccctccaggtgatggccggcgcaccaggccggagagaaaaggccctcttcaccgagaaa
ggcgatggagaaccggtcaccgtcgccgcctgcgggaacgatgcgggtgaggccgagtac
gtggcagccgagatcgagaagctggtcggcaccccctaccactcaaggcaggacggagga
gaccgaccgctcgaataccgcgacttcacagtcctctgtcgcacgaaggcagacggaaag
aagttccaggccgccctgcagcggcacgccatcccctgcgagtaccaggcgaacgtggac
ttcatgcagctgccggtcgtcagggacatggtcgcatacctccggatcatcgacaacccg
ctgatggccgccgtcccgctgaaccgggtcatgaagatctgctccatccctgagaccgtg
gtgcagaagatcaatgcggcagcgataaagaggggtgatgacgacgatgacggcgtctat
gagacgatgcaggacgcggctagtatcgtccctgatcatgcagagccggtcggagaggtc
gtccggatgctcgcccccttcatcgagcagaaggagcggtacaccctcccggaactggtc
catgcagtgatgatgcaggcctccgggctgtaccgctcggcgctcaccgatacggcagac
atggtcaggctctacctcgcgaccttccacgagatcgtcctggagttcgaccggacgact
cccgaggcgaccatccccggccttctccagtatttggagctgctcggcgccttccccgtg
gaagtcgtcagagagcagaaggaggcaggtgacgcagtgcagatcctgaccgcccacaag
agcaaggggaaggagttcccggtggtcttcgtcgcagacctggccagggagaagttccca
ctcaggtacagtcccaagcggttccgggtccccggcgacctggcccgggggctccggacc
ggcgacgatgagaaggcactctttgttcaggaggaacgccggctcctgtacgtcgcgatg
acccgagccgaggagcggctgtacctgacctatgcgaagtggtacggtgacaacaaacgt
gagaggaagccgtccccgttcctggaggaactcaacttccgggagaacccgctcatcacg
gtcgtcgagcccccggcctgcgccccggccctgccggtgacggcaggagaccctgtcgag
gatctccgaacctcgctgcaggaggaggtggtccgggctgtctcggagatgcgcatctcc
acggccatccagacccttgtgaccctcgaaggagtgcgggagtacgcagagcagggtacc
gatgacttcgaccgggacgccttcctcgcgaaagcagggagccgggtcggggccgacacc
aggatcacaaccctcctcgacccgccccaccagtcgctcatcccaccgaactaccggttc
tccgcctcagccctctcgacctaccaggactgcccgcttcagttcaagttcgccaacctc
taccgggtcccgctgcccaggcagccccagctggtcttcggttccaccctccattcggtg
atcgagcacctcaccaggaaccccgacccctcacagtcgctccgcgaccaggggctcgca
ctcctcgaagagtactggtccccagagccgtacgaatcgaagacccaggagtcggaggcc
cacgattcggcatcggctctcctcgacacctatctggcatggcaggcaggaaacccaaat
accgtgatcggggtcgagaaggagttcaccttctccttcgccggtcatagcatccatgga
tttatcgaccggctcgagcaaactccggacggaaattatgtggtgatcgacttcaagtca
ggcaagaaacccgactccctcacgaagaaagcggtcggcgaacatatccagctgaacctt
tactccatggctgtccagcagatgtatcaggtactcccggagaaggccgagctcttctac
ttaaaggatggaaaacgggtctcgtatctcccgaccgaggagacgatccaggtcttcact
gggacactcagcaccctgatcggagggatcaccagggaagagtttccacccaagtcggac
aatcagagatgccagtggtgtgcgtaccgacccctctgtggtacagatctgaaaggctaa |