Methanosphaerula palustris: Mpal_1018
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Entry
Mpal_1018 CDS
T00823
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mpl
Methanosphaerula palustris
Brite
KEGG Orthology (KO) [BR:
mpl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mpl03016
]
Mpal_1018
Enzymes [BR:
mpl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Mpal_1018
Transfer RNA biogenesis [BR:
mpl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Mpal_1018
Prokaryotic type
tRNA splicing ligases
Mpal_1018
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACL16366
UniProt:
B8GGW1
LinkDB
All DBs
Position
complement(1047020..1048453)
Genome browser
AA seq
477 aa
AA seq
DB search
MLKGVTQISDVEWEVPIGYVPGMKVSGRFFLSNGLEATLEEGAIRQLANVATMPGIINHS
LAMPDIHWGYGFPIGGVAAFPRENGVISPGGVGFDINCGVRLITTPLKVKDLTSKKALIE
ELFHAVPTGVGAKSARPVSSSDLTGILTDGAGWAVEQGFGTEHDLVRCEEQGRMKEANPD
AVSQKARQRGIPQPGTLGAGNHFLEVQVVGEIADHKAAGLFGVEQGQVCVMIHCGSRGLG
HQVCTDHLKTLEAATKKYGINLPDRQLACAPLDSPEGTAYFGAMAAAANYAWANRQMITH
QVRQVFSRAFRISPEEMPLVYDVAHNIAKFETHQVNGVATEVCVHRKGATRAFGPGSPDL
PPELTSIGQPVIIPGSMGTSSYLLHGTSTAMERTFGSTCHGAGRVMSRSEAKRTFTGQQV
KARLGESGILVRAPNDAAIAEEAPGVYKPSGEVIRVVIEAGLSAGVARLDPLGVIKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaaggagttacacagatcagcgatgtggagtgggaggtgccgatcgggtacgtc
ccggggatgaaggtgtcgggccggttcttcctctccaacggactggaagcgacgctcgag
gagggggccatcaggcagctcgccaatgtggcgacgatgccagggatcatcaaccattcc
ctggcgatgccagacatacactggggatatggatttccaatcggcggggtcgcggccttt
ccccgtgaaaatggtgtgatctccccgggcggggtcggttttgatatcaactgcggggtc
aggctgatcacgacgccgctgaaggtgaaggacctgacttcaaagaaggcgttgatcgag
gaactctttcatgcggttccgacgggggtcggggcgaagtcggccagacctgtctcgtcc
agcgacctcaccggaatcctgaccgatggagccggctgggcggtcgagcaggggttcgga
accgaacacgatctggtccggtgcgaggagcaggggcgaatgaaggaggcaaaccccgac
gcggtcagccagaaagctcggcagcgcggcatcccacagccggggaccctcggtgccggc
aatcacttccttgaggtgcaggtggtcggggagatcgccgatcacaaagcagccggcctg
ttcggagtcgagcaggggcaggtctgtgtgatgatccactgcgggtctcggggactcggc
caccaggtctgtacagaccatttaaagactctcgaagcagcgacgaagaagtacgggatc
aaccttcctgatcggcagctggcctgtgctccgctcgactcacctgaaggaaccgcctac
ttcggggcgatggccgcggccgccaactatgcctgggccaatcggcagatgatcacgcac
caggtcaggcaggtcttctcccgggccttccggatcagccctgaagagatgccgctggtc
tacgacgtggcccataacatcgccaagtttgagacgcaccaggtcaacggggtcgcaaca
gaggtctgcgtccatcggaagggggcaacccgggcgttcggcccgggatctccagacctg
cccccagaactgacctcgatcggacagccggtgatcatccccggctcgatggggacctct
tcatacctgctgcatgggaccagtactgcgatggagcggaccttcggctcgacctgccac
ggggcagggagggtgatgtcccggtctgaagccaagagaaccttcaccgggcagcaggtg
aaggcccgcctcggggagagcgggatcctggttcgggccccgaacgatgctgccatcgcc
gaggaggcgcccggcgtgtacaaaccgagcggcgaggtgatcagggtggtgatcgaggcc
ggcctctcggctggggtagccaggctggatccactcggagtgatcaaaggatga
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