Methanosphaerula palustris: Mpal_1040
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Entry
Mpal_1040 CDS
T00823
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mpl
Methanosphaerula palustris
Pathway
mpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mpal_1040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpl03019
]
Mpal_1040
03009 Ribosome biogenesis [BR:
mpl03009
]
Mpal_1040
Enzymes [BR:
mpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mpal_1040
Messenger RNA biogenesis [BR:
mpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mpal_1040
Ribosome biogenesis [BR:
mpl03009
]
Prokaryotic type
rRNA helicases
Mpal_1040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACL16388
UniProt:
B8GGY3
LinkDB
All DBs
Position
1069002..1070654
Genome browser
AA seq
550 aa
AA seq
DB search
MIRRRGTVSDTIEKISNTDTPAEPVTNAFEALGISKEIQRAIVDLGFEEPTPIQQMAIPL
IHQGFDVIGQAQTGTGKTAAFGIPTLEKIDPLDKHVQALILSPTRELTIQIAEELSKLAR
YRRGIAILPIYGGQPIERQFDALRRGVQVVIGTPGRVMDHMRRGTLVFDHVKTVVLDEAD
EMLDMGFRDDIELILKTTPSDRQTTLFSATMSQPILELTKRFQKSPKMVKVTHKELTVAA
VEQIYYEVRESLKLEALARLLDIYNPKLTLIFCNTKRRVDELVGQLQVRGYAAEALHGDL
KQSQRDRVMGRFRSGGIDILVATDVAARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRA
GRTGRAFTFVSGKEIWKIRDIQRYTNTRVIQAQVPTLSDVEEIRTTLFIDKVKTIVDAGG
LEKYVSMIEKLMRDDYASLDIAAALLKMRMERDTKEETAAEPDFKNTGAEAGMVRFFLNV
GRNHNVRAKDILGAIAGETGIPGKSIGAINIFDSYSFVEVPLEHAKTVYQIMNKNQIKGN
TINIEPANQR
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgataaggagaagaggtactgtgagcgatacaatagagaagatatccaatactgatacg
ccggccgaacctgttaccaatgcattcgaggcactgggtatctcaaaagagatccagaga
gccatcgttgatctcgggttcgaagagccgacccccatccagcagatggcgatccccctg
attcatcagggatttgatgtgatcggccaggcccagactgggactggtaaaacggcggct
tttggaataccaacgctagagaagattgatcccctggataaacatgtccaggctctgatt
ctcagcccaacccgtgagttgaccatccagatcgccgaggaactgagcaaactggcccgt
taccgacgcgggatcgcgatcctaccgatctatggcggtcagcctatcgagcggcagttc
gatgctctcagacggggcgttcaggtcgtgatcggaaccccaggcagggtcatggaccat
atgcgtaggggaacgctggtcttcgaccacgtgaagaccgtggtcctcgacgaagcggac
gagatgctggatatgggcttccgggatgatatcgaactgatcctcaagacgacgccgtca
gaccggcagaccacgctcttttcagctacgatgtcgcagccgatcctggaactgaccaag
cggtttcagaagagcccgaagatggtcaaggtcacccacaaggaactgacggtcgcggca
gttgaacagatctactacgaggttcgcgaatcgctgaagctcgaggcgctggcccgcctg
ctcgatatttacaatccgaaactgaccctgatcttctgcaacaccaagcggcgggtcgat
gaactggtcggacagttacaggtcaggggatatgctgcggaggctctccatggagaccta
aagcagtcacagcgcgaccgggtgatgggcaggttcagatccggtgggatcgatatcctg
gtcgcgaccgatgtcgcagcccgtgggatcgatgtcgacgatatcgaggcggtcttcaac
tacgatattccgcaggacgaggagtattatgtgcaccggatcggcaggaccggacgggcc
ggcaggaccgggcgtgcgttcaccttcgtctcgggtaaggagatctggaaaatccgggat
atccagcggtacaccaacacccgcgtgatccaggcccaggtgccgaccctctcggatgtc
gaggagatccggaccacactcttcatcgacaaggtgaagacgatcgtcgatgcaggtggg
cttgaaaagtacgtctcgatgatcgagaaactgatgcgtgacgactacgcttcgcttgat
atcgcagcagcactgctgaagatgcggatggagcgtgataccaaggaggagaccgccgcc
gagccggacttcaagaataccggtgccgaggctggcatggtcaggttcttcctcaatgtc
ggcagaaaccacaatgtccgggcgaaggatatcctcggtgcgatcgctggcgagaccggg
attcctggaaagtctatcggtgcgatcaacatctttgacagttactcgttcgtcgaggtg
ccgcttgagcacgcaaagacggtctaccagatcatgaacaagaaccagatcaaagggaat
acgatcaacatcgaacccgcaaaccagcggtaa
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