Methanosphaerula palustris: Mpal_1821
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Entry
Mpal_1821 CDS
T00823
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
mpl
Methanosphaerula palustris
Pathway
mpl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mpal_1821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpl03400
]
Mpal_1821
DNA repair and recombination proteins [BR:
mpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Mpal_1821
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Mpal_1821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
Kinesin
Flavi_DEAD
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ACL17127
UniProt:
B8GK56
LinkDB
All DBs
Position
complement(1928742..1930706)
Genome browser
AA seq
654 aa
AA seq
DB search
MKRTEDQQHPFKLVSPFEPKGSQPEAIEQLVQGLSDGPARQTLLGVTGSGKTFTIANVIA
AVQRPTLVIAHNKTLAAQLYNEFKDFFPENRVEYFVSYYDYYQPESYIPQRDQYIEKDSQ
INPKIEQMRLATTASLMSRRDVIVVASVSCIYGLGNPENFQSMGFELKVHDRVQRRALLL
RLVEIQFERNDLELMPGRFRVKGDTIDIIPGYFNNIIRIELFGDEIERIMEIDRNTGEKR
ESMDYFFVYPARHFVIPEETRKRAMASIREELEERLPELGLIESHRLAQRTQYDLEMMEE
TGSCKGIENYSRHFDFRKAGEKPYCLLDYFPDDFLMVIDESHQTIPQVHGMYKGDYSRKK
SLIDYGFRLPSAFDNRPLKFEEFERYMKDVIYVSATPSRYERETSIQVVEQIIRPTGLID
PPVTIRPTDGQTVDVIREVKKVIARGDRALITTLTKRLAEELTEYLADRGIRTRYLHSEI
DTIERTEIIRQLRLGEFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDARSLIQIIG
RAARNMHSYVVLYADTMTDSIKTALSETERRRTLQIAYNEEHHIVPETIRKPIREKEIDL
KDVKHLPRKEIPNLLIALDAEMKQAAEVLDFERAIALRERIKQLNARAAEDGEI
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggacagaagatcagcagcatccattcaaacttgtttcacccttcgaaccgaag
gggtcccagcccgaggcgatagagcagctggtgcagggtctctctgacgggcccgcccgc
cagaccctgctcggggtcaccgggtcagggaagacctttacgatcgcgaacgtcatcgca
gccgtccagcggccgacgctggtcatcgcccacaataagaccctggccgcccagctgtac
aatgaattcaaggacttcttccctgagaaccgggtcgagtacttcgtctcgtactacgac
tattaccagcccgagtcctatatcccgcaacgggatcagtacatcgagaaggactcgcag
atcaacccgaagatcgagcagatgcggctcgcgacgaccgcatcgctgatgagccggcgc
gacgtgatcgtcgtcgcctcggtctcctgcatctacggtctcggcaatccggagaacttc
cagtcgatggggttcgaactgaaggtgcacgaccgggtgcagcgtcgagcgctccttctg
cgcctggtcgagatccagttcgagcggaacgatctcgaactgatgcccgggaggttccgg
gtgaagggggacacgatcgatatcatccccgggtacttcaacaatattattcggatcgaa
ctcttcggcgacgagatcgagcggatcatggagatcgaccggaacaccggggagaagcgg
gagagcatggactacttcttcgtctacccggcccgccacttcgtgatccccgaggagacc
cggaagcgtgcgatggcgtcgatccgggaggaactcgaggaacggttgcctgaactcggg
ctgatcgagtcgcaccggctcgcccagcggactcagtacgatctggagatgatggaggag
accgggagctgcaaggggatcgagaactattcccgtcatttcgactttcgcaaggccggg
gagaagccgtactgcctcctcgactacttccccgacgacttcctgatggtgatcgacgag
agccaccagacgattccgcaggtccacgggatgtacaaaggggactattcacgcaagaag
tccctgatcgactacgggttccggcttccgagcgcttttgacaaccggccgctgaagttc
gaagagttcgagcggtacatgaaggacgtgatctatgtctctgcgaccccgtcccggtac
gagcgcgagacgtcgatccaggtggtcgaacagatcatccggccgaccggcctcatcgac
ccgccggtgacgatccggccgaccgatgggcagaccgtcgatgtgatcagggaggtgaag
aaggtgatcgcccggggcgaccgggccctgatcaccaccctgaccaagcggctcgctgag
gaactgaccgagtacctcgccgaccgtgggatccggacccggtacctgcactctgagatc
gacacgatcgaacggaccgagatcatccgacagctcaggctcggggagttcgatgtgctg
gttgggatcaacctgcttcgggaagggctcgacatccccgaggtcgggttcatcgggatc
ctcgatgcggacaaggaggggttcctgcgggacgcccggtccctgatccagatcatcggg
cgggctgcccggaacatgcactcgtatgtggtcctgtacgctgacaccatgaccgactcg
atcaaaacggccctcagcgagaccgaacggcggcggaccctgcagatcgcctacaacgag
gagcaccatatcgtccccgagacgatcagaaagccgatccgggagaaggagatcgacctg
aaggatgtcaagcacctgccgcgaaaggagatcccgaacctgctgatcgccctcgatgcc
gagatgaagcaggccgccgaggtgctcgacttcgagcgggcgattgcccttcgcgagcgg
atcaagcagctcaatgcccgtgctgccgaggatggagagatctga
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