Pseudoduganella plicata: E1742_01960
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Entry
E1742_01960 CDS
T06563
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mpli
Pseudoduganella plicata
Pathway
mpli03410
Base excision repair
mpli03430
Mismatch repair
mpli03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mpli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
E1742_01960 (recJ)
03430 Mismatch repair
E1742_01960 (recJ)
03440 Homologous recombination
E1742_01960 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpli03400
]
E1742_01960 (recJ)
DNA repair and recombination proteins [BR:
mpli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
E1742_01960 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
E1742_01960 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E1742_01960 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
DUF484
Motif
Other DBs
NCBI-ProteinID:
QBQ35072
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All DBs
Position
complement(464545..466239)
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AA seq
564 aa
AA seq
DB search
MTRIATRPCPFRESEMLRQGGIHPVLARLFAARGLLDPKELSSELGALILPSGLLQIDVA
AAFLADAIAANKRMVIVADYDCDGATACATALRGLRAMGANVDFIVPNRFEYGYGLTPEI
VELTAREKSPDIIITVDNGIASIEGVEAAKRRGIEVVVTDHHLPGDRLPDARVIVNPNQP
ECGFPSKNLAGVGVVFYVLLALRAELRRRGVFDQQTQPKLDNLLDLVALGTVADVVKLDA
NNRILVAQGLKRMRAGRMHAGVAALFRVAGRQARSATPFDLGFALGPRLNAAGRLQDMSL
GIECLITDDEERAWALAQQLNEINIRRREIEAEMQDAALVHLDAFEPRDSTTISVFDESW
HQGVIGIVASRLKEKFYRPAITFALAGDGWIKGSGRSIAGFHLRDALDLVSKKAPSLIDK
FGGHSMAAGLSIRADAFDAFAEAFETVGRSWLTDGQLERIVETDGPLEDAHYTTQFIELM
DGIVWGQGFPPPVFCDEFRVVSQRILKERHLKLLLERNGTRYDAIWFGHTDALGDRARVA
FRLDANEYNGTTRVQLLVEHAEPC
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgacccgcatcgccacccgtccctgcccgttccgcgaatcggaaatgctgcgccagggc
ggcatccaccctgtgctggcgcgcctgtttgcagcgcgcggcctgctcgacccgaaagaa
ctgtcgtccgagctgggcgccctgatcctgccgtccggcctgctgcagatcgacgtggcc
gccgccttcctggccgacgccatcgcggccaataaacgcatggtcatcgtagccgactac
gactgcgacggcgccaccgcctgcgccaccgcgctgcgcggcctgcgcgcgatgggcgcc
aatgtggacttcatcgtgccgaaccgttttgaatacggctacgggctgacgccggaaatc
gtcgagctgacggcgcgcgagaagtcgccggacatcatcatcaccgtcgataacggcatc
gccagcatcgaaggggtcgaggcggcgaaaaggcgcggcatcgaagtggtcgtcaccgac
caccacctgccgggcgaccggctgccggatgcacgcgtcatcgtcaatccgaaccagccg
gaatgcggcttcccgtcgaagaacctggccggtgtcggcgtcgtgttctacgtgctgctg
gcgctgcgggcggaactgcgccgacgcggcgtgttcgaccagcagacgcagcccaagctg
gacaacctgctcgacctggtggcgctggggacggtggcggacgtcgtcaagctcgatgcc
aacaaccgcatccttgtcgcgcagggcctgaagcgcatgcgcgcgggccgcatgcatgcg
ggcgtggcggcgctgtttcgcgtggcgggccggcaggcgcgcagcgccacgccgttcgac
ctgggcttcgccctcggcccgcgcctgaacgcggcgggccggctgcaggacatgtcgctg
gggatcgagtgcctgatcacggacgacgaggagcgggcctgggcgctggcgcagcagctc
aacgaaatcaatatccgccggcgcgagatcgaggcggaaatgcaggacgcggcgttggtg
cacctcgacgcgttcgaaccgcgcgacagcacgaccatcagcgtgttcgacgaatcgtgg
caccagggggtcatcggcattgtcgcgtcgcggctgaaggagaagttctaccggccggcg
atcacgttcgctctggccggcgacggctggatcaagggatcgggccgttccatcgccggc
ttccacctgcgcgacgcattggacctggtgtcgaaaaaggcgccgagcctgatcgacaag
ttcggcggccactcgatggcggccggcctgtcgatccgcgccgatgcgttcgacgctttt
gccgaagcattcgagacggtgggccgctcctggctgaccgacggccagctcgagcgcatc
gtcgagacggacgggccgctggaagatgcgcactacaccacccagttcatcgagctgatg
gacggcatcgtatgggggcaaggctttccgccacccgtgttctgcgacgagttccgcgtc
gtcagccagcgcatcctgaaggagcgccacctgaagctcctcctggaacgcaacggcacg
cgctacgacgccatctggttcggccacacggacgcactgggcgaccgcgcacgcgtcgcg
ttccggctcgacgccaacgaatacaacggcacgaccagggtgcagctgctggtcgaacac
gccgagccctgctga
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