Pseudoduganella plicata: E1742_03505
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Entry
E1742_03505 CDS
T06563
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mpli
Pseudoduganella plicata
Brite
KEGG Orthology (KO) [BR:
mpli00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpli03032
]
E1742_03505
03400 DNA repair and recombination proteins [BR:
mpli03400
]
E1742_03505
Enzymes [BR:
mpli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
E1742_03505
DNA replication proteins [BR:
mpli03032
]
Prokaryotic type
DNA Topoisomerases
E1742_03505
DNA repair and recombination proteins [BR:
mpli03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E1742_03505
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Ribosomal_L40e
Motif
Other DBs
NCBI-ProteinID:
QBQ35332
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Position
complement(833194..834399)
Genome browser
AA seq
401 aa
AA seq
DB search
MKPEESTANRAADAPAAARAAGLRYVVDTRPGLSRIALDGGGFRYVDAHGEQVEDEATLG
RIRSLAIPPAWRDVWICAQANGHLQATGRDARGRKQYRYHPRWRSVRDEVKYERMIAFGR
ALPGIRRTVDAALGLPGLPREKVLATIVYLLEATMMRIGNEEYAKENKSFGLTTLRNRHV
RIDGKEVEFRFRGKSGVWHDVKVADRRLARIIARARDLPGQELFQYIDDDGNTHAIDSAD
VNDYLRTITGEDYTAKDFRTWSGTVLAALALQEFEKFDSETQAKKNVVRAIESVAKKLGN
TPSVCRKCYVHPAVLEAYMDGTEVAALRTRAEQELSEDLHALQPEEAAVMALLQQRLERE
EQLIAAKGKAAPKPARTTARRAKDGAAKSGGKARRAATASA
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccagaagaaagcaccgcaaatcgggccgccgacgcgccggccgccgcccgtgcc
gcgggactgcgctacgttgtcgatacccgtcccggcctgtcccgcattgcactcgatggg
ggcggcttccgctacgtcgatgcgcacggcgagcaggtagaggacgaggcgacgctggga
cgaatccggtcgctggccatcccgccggcatggcgcgacgtgtggatctgcgcccaggcc
aacggccacctgcaggcgacggggcgcgatgcgcgcgggcgcaagcagtaccgctaccat
ccccgctggcgcagcgtgcgcgacgaggtcaagtacgaacggatgatcgcgttcgggcgc
gcgctgccgggcattcgccgcaccgtggacgcggcactgggcctgcccggcctgccgcgc
gagaaggtgctggcaaccatcgtctacctgctggaagcgacgatgatgaggatcgggaac
gaggaatacgcgaaggagaacaagtcgttcggcctgacgacattgcgcaaccgccacgtg
cgcatcgacggcaaggaagtcgagttccgtttccgcggcaagagcggcgtctggcacgac
gtcaaggtggcggaccgccggctggcccgcatcatcgcccgcgcccgcgacctgcccggc
caggagctgttccagtacatcgacgacgacggcaacacccatgcgatcgactcggccgac
gtcaacgactacctgcgcacgatcacgggcgaggactatacggccaaggacttccgcacc
tggtccggcaccgtgctggccgcgctggcactgcaggaattcgagaagttcgactccgag
acgcaggccaagaaaaacgtcgtgcgcgccatcgaatcggtggcgaaaaagctgggcaat
acgccgtccgtctgccgcaagtgctatgtgcacccggccgtgctggaagcgtacatggac
ggcaccgaagtggccgcgctgcgcacgcgcgcggaacaggaactgtccgaggacctgcat
gccctgcagccggaagaggcggccgtgatggcgctgctgcagcagcggctggaacgggaa
gagcaactgattgccgccaagggcaaagctgcgccgaagcccgcgcgcacgacggcgcgg
cgggcaaaggacggcgcagcgaagagcggcggcaaggcgcggcgtgccgcgaccgcctcg
gcatga
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