Pseudoduganella plicata: E1742_09400
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Entry
E1742_09400 CDS
T06563
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mpli
Pseudoduganella plicata
Brite
KEGG Orthology (KO) [BR:
mpli00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpli03019
]
E1742_09400 (hrpA)
Enzymes [BR:
mpli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E1742_09400 (hrpA)
Messenger RNA biogenesis [BR:
mpli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E1742_09400 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
NACHT
T2SSE
AAA_30
AAA_16
ResIII
TsaE
AAA_25
SLFN-g3_helicase
PhoH
SRP54
Motif
Other DBs
NCBI-ProteinID:
QBQ36349
LinkDB
All DBs
Position
complement(2133759..2137943)
Genome browser
AA seq
1394 aa
AA seq
DB search
MSEASKQSLSSSPVTPVEKPKDTRPAPDGQPRQPREGRARAPGEAARRGESGQRRQPNGP
KTPETQEQAAARAAREAQRAEREAERAFRNPLPPIRFPEDLPVSGRREEIAEALRRHQVV
IVSGETGSGKTTQLPKICLELGRGQNGLIGHTQPRRIAASSTAKRIAQELGSPLGEHVGY
KVRFNDTLHKGAYVKLMTDGILLAETQTDPLLKGYDTIIIDEAHERSLNIDFLLGYLKQL
LPRRPDLKVIITSATIDAERFARHFSQEGKPRVPVIEVSGRLYAVEIRYRPVEREAMTLP
PGANAAKPQLRTSAAAKEKRDLMDAIVDGVDEVCRLGQGDVLVFLPGEREIRDAAEALRK
HHPPHVEILPLFARLSVEEQDRVFRTTNQRRIVLATNVAETSLTVPGIRYVVDAGTARVK
RYSYRNKVEQLQVEPIAQSAANQRAGRCGRVADGVCIRLYDEQDYNGRPKFTEPEILRSS
LAAVILRMKSLHLTDVETFPFIEPPQARAIADGYQLLQELGAVDDDNRLTPLGRKLAKLP
LDPRVGRMILAAQESACLTEVLIVASALSVQDPRDRPIEHQQAADQAHAKFNDEKSEFLS
YLKIWHWFADAIEHKKTNRQLQDNCRSNFLSQVRLREWRDVHSQLLTLVKEQGWRLNEAP
ATYEQLHMALLTGLLGNVGFKMEDDPGYLGARGIKFHIWPGSSLGKKAGKWVMAAELVET
TRLYARTIARIEPEWLEKVGAHLLRKSWGEPRWEKRQAQVTAAEKATLYGLTVYSQRRIN
YALHNPAEAREIFIRDALVAGDYDTRAPFFAYNHKLVKEIETLEHKSRRQDVLVDEQLIE
AFYDKLIPHDVVNGAGFEAWHKKATQADPKLLYLVKEDLMRHEAAGVTTELFPKKMLAAG
IEMTLTYHFEPGTVRDGVTLHVPLYALNQLSRERCEWLVPGMLKEKVHLLLKSLPQKQRR
HMVPLPDYAAKFCERIAAKESFGRGDLIDAIIADIREQVTINVLTSDFKPEQLPAHHFMN
FKVLDEHGRQLDMGRNLATLQAEYGLQARQSFQKMAENAPPASSASLARLDGGAKPAKGA
AHGGIAGEVKAGGKPGSAPPPAPAAPPAPAAAHTNITAWTFGELPELLEIVQGKLTLIGF
PALVDKVGHCDLEVFDDPNVAARTHRVGLRRLFALQMKDQIKFVEKSIPNLQQMGMQFMA
MGTQEELRDQIIAKAIDIACLQDPLPTDAASFNKRKDEGKSRLVLLVNEIARLVSQVLTE
FHGLPKRLQGINPQAAADMQEQLKGLVHKRFLLDTEFSQLAHFPRYLKAMNVRLEKLRAD
AARDAKSMAEWQQAAQPYLRVARDKSAGKNTDPKLVEFRWLLEELRVSLFAQELRTPMPV
SVKRLFKVWESMQR
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagccagcaagcagtccctttcctcctctcccgtcacccccgtcgagaagccc
aaggatacccggcccgcgccggacggccagccgcgccagccgcgcgaggggcgtgcacgc
gcgcccggcgaggcggcgcggcgcggagagtcgggccagcgccgtcagccgaacgggccg
aagacacccgagacgcaggaacaggcggccgcccgcgccgcacgcgaagcgcagcgcgcc
gaacgcgaggcggaacgggcgttccgcaatccgctgccgccgatccgctttcccgaggac
ttgcctgtctcgggccgccgcgaggaaatcgccgaggcgttgcgccgccaccaggtggtg
atcgtctccggcgagacggggtcgggcaagacgacgcagctgccgaagatctgcctggaa
ctggggcgcggccagaatggcctgatcggtcacacgcagccgcgccggatcgccgcgtcg
tccaccgcgaaacgcatcgcccaggaactgggctcgccgctgggcgagcacgtgggctac
aaggtacgtttcaacgacacgctgcacaagggcgcgtacgtcaagctgatgacggacggt
atcctgctggccgaaacgcagacggacccgctgctcaagggctacgacacgatcatcatc
gacgaagcccacgagcgcagcctgaatatcgacttcctgctcggctacctgaagcagctg
ctgccgcgccggcccgacctgaaggtcatcatcacgtccgccacgatcgatgcggagcgc
ttcgcgcgccacttctcgcaggaaggcaagccgcgcgtgcccgtcatcgaggtctcgggc
cgcctgtacgcggtggagatccgctaccgccccgtcgagcgcgaggcgatgacgctgccg
cccggcgcgaacgccgccaagccgcaattgcgcacgtccgccgcggccaaggagaagcgc
gacctgatggatgccatcgtcgacggcgtcgatgaagtgtgccgcctggggcagggcgac
gtgctggtgttcctgccgggcgagcgcgagatccgcgatgccgccgaggcgctgcgcaag
caccatccgccgcacgtggagatcctgccgctgttcgcacgcctgtccgtcgaggagcag
gaccgcgtgttccgcacgacgaaccagcgccgcatcgtactggccacgaacgtggccgag
acgtcgctgacggtgccggggatccgctacgtcgtcgatgccggcacggcgcgcgtcaag
cgctacagctaccgcaacaaggtcgaacagctgcaggtagagccgatcgcacagtcggcg
gccaaccagcgtgccggccgttgcggccgcgtggccgacggcgtctgcatccgactgtac
gacgagcaggattacaacgggcggccgaagttcaccgaacccgagatcctgcgctcgtcg
ctggcggccgttatcttgcgcatgaagtcgctgcacctgaccgacgtcgagacgttcccg
ttcatcgagccgccgcaggcgcgcgccatcgccgatgggtatcagctgctgcaggagctg
ggcgcggtggacgacgacaaccgcttgacgccgctgggccgcaagctggccaagctgccg
ctggacccgcgcgtgggccgcatgatcctggcggcgcaggagagcgcgtgcctgacggag
gtgctgatcgtggcatcggcgctgtccgtgcaggacccgcgcgaccgtcccatcgagcac
cagcaggccgcagaccaggcgcacgccaaattcaacgacgagaagtccgagttcttgtcg
tacctgaagatctggcactggtttgcggacgccatcgaacacaagaaaaccaaccgccag
ctgcaggacaactgccgcagcaatttcctgtcgcaggtgcgcctgcgcgaatggcgcgac
gtgcactcgcagctcctcaccctggtcaaggaacagggctggcgcctgaacgaggcaccg
gcgacgtacgagcagctgcatatggcgctgctgacgggcctcctgggcaacgtcggcttc
aagatggaagacgacccgggctacctgggcgcgcgtggcatcaagttccatatctggccc
ggctcctcgctgggcaagaaggcgggcaagtgggtgatggcggccgaactggtcgagacg
acgcggctgtatgcgcgcacgatcgccaggatcgagccggaatggctggagaaggtcggc
gcccacctcctgagaaaatcgtggggcgagccgcgctgggagaagcgccaggcgcaggtg
acggcggcagagaaggcgacgttgtacggtctgacggtgtacagccagcggcgcatcaac
tacgcgctgcacaatccggccgaggcgcgcgaaatcttcatccgcgacgctctggtggcc
ggcgactacgacacgcgcgcaccgttcttcgcctacaaccacaagctcgtgaaggaaatc
gagacgctggaacacaagtcgcgccgccaggacgtgctggtggacgagcagttgatcgaa
gcgttctacgacaagctgattccgcacgacgtggtcaacggcgccggtttcgaggcgtgg
cacaagaaggccacgcaggccgacccgaagctgctgtacctcgtcaaggaagacctgatg
cgccacgaggcggcaggcgtgacgacggagctgttcccgaagaagatgctggctgccggc
atcgagatgacgctgacgtatcacttcgagccgggcacggtgcgcgacggcgtcacgctg
cacgtgccgctgtatgcgctcaaccagctgtcgcgcgaacggtgcgagtggctggtgccg
ggcatgctgaaggagaaggtgcacctgctgctcaaatccctgccgcagaagcagcgccgc
catatggtgccgttgccggattacgcggcgaagttctgcgaacggatcgcagcaaaagaa
tcgttcgggcgcggtgacctgatcgacgccatcatcgccgacatccgcgagcaggtgacg
atcaacgtgctgacgtccgacttcaagcccgagcagctgccggcgcaccacttcatgaac
ttcaaggtgctcgacgagcacggacgccagctggacatgggccgcaacctggcgaccttg
caggccgagtacgggctccaggcgcgccagagcttccagaagatggcggagaatgcgccg
ccggcgtcgagcgcatcgctggcgcggctcgatggcggcgcaaaaccggcaaaaggcgcg
gcacacggcggcatcgccggcgaggtcaaggccggcggcaaaccgggcagtgcgccgccg
cccgcacctgccgcaccgccggcccccgccgcggcgcatacgaacatcacggcgtggacg
ttcggcgaactgcccgaactgctggagatcgtgcagggcaagctgaccctgatcggcttc
ccggcgctggtcgacaaggtcggtcattgcgacctggaggtgttcgacgacccgaacgtg
gcggcgcgcacgcatcgcgtcgggctgcgccggctgttcgcgctgcagatgaaggaccag
atcaagttcgtggaaaagagcatcccgaacctgcagcagatgggcatgcagttcatggcg
atgggcacgcaggaggaactgcgcgaccagatcattgccaaggcaatcgacatcgcctgc
ctgcaggatccgctgccaacggatgccgcgtcgttcaacaagcgcaaggacgagggcaag
tcgcgcctcgtgctgctggtgaacgagatcgcccgcctcgtctcgcaggtgctgacggag
tttcacggcttgcccaagcggctgcagggcatcaacccgcaggcggctgcggacatgcag
gaacagctcaagggcctcgtgcacaagcgcttcctgctcgatacggagttttcccagctg
gcgcacttcccgcgctacctgaaggcgatgaacgtccgcctggaaaagctgcgtgccgat
gcggcccgcgatgcgaaatcgatggccgaatggcagcaggccgcgcagccttacctgagg
gtggcgcgcgacaagtcggccggcaagaacaccgatccgaagctggtggaatttcgctgg
ttgctggaggagttgcgggtgtcgctgttcgcgcaggagttgcgcacgccgatgccggta
tccgtcaagcggctgttcaaggtatgggaatcgatgcaacgctag
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integrated database retrieval system
