KEGG   Pseudoduganella plicata: E1742_22430
Entry
E1742_22430       CDS       T06563                                 
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
mpli  Pseudoduganella plicata
Pathway
mpli03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mpli00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    E1742_22430 (sbcB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mpli03400]
    E1742_22430 (sbcB)
Enzymes [BR:mpli01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     E1742_22430 (sbcB)
DNA repair and recombination proteins [BR:mpli03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     E1742_22430 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     E1742_22430 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      E1742_22430 (sbcB)
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T
Other DBs
NCBI-ProteinID: QBQ38619
LinkDB
Position
complement(5091591..5093036)
AA seq 481 aa
MSNHTFLWHDYETFGVVPRRDRPAQFAAIRTDAELNEIGEPIMLFCQPANDYLPDPQSCL
ITGITPQQCLNDGVPEHEFARVIEGAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYA
REWQNGCGRWDLLDVVRMCYALRPDGINWPAGDNGKPSFKLELLTAANGLQHEAAHDALS
DVRATIALARLIRQKQPRLYDFCLALHKKDRVAEEAGLHLARELRRPFLHVSGMFPAERG
CMALVWPLASHPTNRNELIVWDCHHDPRELFELDADTIRQRMFTRGDDLPEGVTRLPIKT
IHLNKSPMLVSNLKTLSAQMAERWGMDVERALTHAGYAGAGPDMSAIWEAVFHRPASEPG
DVDEDLYGGFVGSTDRRLLESLRRESPQRLATLAPHFEDERLGELLFRYRARNFPETLSE
QEFEHWEQHRAARLLEGADGARSLDQLFGEIDHLSAEADERAEAILGQLYDYAEMIVPQP
Y
NT seq 1446 nt   +upstreamnt  +downstreamnt
atgagcaaccacacctttctttggcacgattacgaaaccttcggcgtcgtaccgcgccgc
gaccgccctgcccagttcgccgcaatccgcaccgatgccgagctgaacgaaatcggcgag
ccgatcatgctgttctgccagcccgccaacgactacctgcccgacccgcagtcctgcctg
atcacggggatcacgccgcagcagtgcctgaacgatggcgtgccggagcacgaattcgcc
cgcgtcatcgaaggagcgttttcccagccgggcacgatcggcgtcggctacaacaccatc
cgcttcgacgacgaagtgacgcgcttcctgttctggcgcaacctgatcgacccgtacgcc
cgcgaatggcagaacggctgcggccgctgggacctgctggacgtcgtgcgcatgtgctac
gcgttgcgccccgacggcatcaactggcctgcaggggataacggcaagcccagcttcaaa
cttgaattattaacagccgccaacggtttgcagcacgaggcggcgcacgacgcactgtcc
gacgtgcgcgccaccatcgcgctggcgcggctgatccgccagaagcagccgcgcctgtac
gacttctgcctggcgctgcacaagaaggatcgcgtggccgaggaagcggggctgcacctg
gcgcgcgagctgcgccggccgttcttgcacgtgtccggcatgtttcctgccgagcggggt
tgcatggcgctggtgtggccgctggccagccacccgaccaaccgcaacgagctgatcgtc
tgggattgccaccacgatccgcgcgagctgttcgagctcgatgccgacacgatccgccag
cgcatgttcacgcgcggcgacgacctgcccgaaggcgtgacgcgcctgcccatcaagacg
atccacctgaacaaatcgccgatgctggtgtcgaacctgaaaacgctgtcggcgcaaatg
gccgaacggtgggggatggacgtggagcgcgccctgacgcacgccggttacgcgggcgca
gggccggacatgtcggcgatctgggaggcggtattccaccgtcctgccagcgagccgggc
gacgtggacgaggatctgtatggcggcttcgtcggctcgaccgaccgccggctgctcgaa
tcgctgcgccgcgaaagcccgcaacggctcgccacgctggcgccgcatttcgaggacgag
cggctgggcgagctgctgttccgctatcgcgcccgcaattttcccgagacgctgtcggaa
caggaattcgagcactgggaacagcaccgcgccgcccggctgctggaaggcgccgacggc
gcccgcagcctggaccagctgttcggcgagatcgaccacctgtcggcagaagcggacgag
cgcgccgaggcgatcctggggcagctgtacgattacgcggagatgatcgtgccgcagccg
tattaa

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