Pseudoduganella plicata: E1742_24975
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Entry
E1742_24975 CDS
T06563
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mpli
Pseudoduganella plicata
Pathway
mpli02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mpli00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
E1742_24975 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpli03021
]
E1742_24975 (rpoD)
Transcription machinery [BR:
mpli03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
E1742_24975 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
QBQ39034
UniProt:
A0A4P7BJE5
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All DBs
Position
5664134..5666581
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AA seq
815 aa
AA seq
DB search
MTTKTPKTLTLSAKKPRTEAAPLAVPKTTLSYVIDNAQEAAGKVTVVKKATRARLVAVPG
QEAAPAVEAQASSVADVANAAVDAPAVPKAPVVRVRKAKLDKGAAAVDPALPPTAPAAVS
QVTDAATLASIDTSGYLLPSVKVPGRRGRKPSEFTPENDEVAALNAVERAELKAASKARE
RKAKGLDALGSAEGMSQEDLEKRRQQFKNLINMGKERGFLTYAEINDQLPENIVDPEAIE
GIIATFNDMGIAVYERAPDAESLLLSDSVATAASDDEVEAAAATALSTVDSDFGRTTDPV
RMYMREMGAVALLTREGEIEIAKRIEEGLRDMIQAISACPTTIGEIVTLAEKIESDEMKV
DDVVDGFVDPEETSAPVAPARVVASVDDDEEELEEEEEVDGDANGGAAGFSTEQLAQLKA
DALERFAVIAAQYDKMRKAGYGSAAYQKAQGIISAELLSIRFTAKVVEKLCDTLRGQMEQ
VRSIERAVLELCVNRCGMPRAHFIKVFPGNECNLDWVDGEVGAGHPYSIVLGRNVPAIKE
LQNKMIDLQERVALPLADLRKINKQMAAGEKRARHAKREMTVANLRLVISIAKKYINRGL
QFLDLIQEGNIGLLKAVDKFEYRRGYKFSTYATWWIRQAITRSIADMARTIRVPVHMIET
INKMNRISRQIMQETGSEPDMATLAVKMEMPESKVREIMKIAKEPISMETPMGEDGDSQL
GDFIEDNTTLAPLDAALHASMRNVIKEVLDSLTPREAKVLRMRYGVEMSNDHTLEEVGKQ
FDVTRERIRQIEAKAMSKLRQPSRSDKLKTFLTQN
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgaaaacgccgaaaaccttaacgctgtccgccaaaaaaccgcgcaccgaagcg
gctccgctggctgtccctaagactaccttatcttatgtgatcgacaatgcgcaagaggct
gccggcaaggtaaccgtcgtgaagaaagccacccgtgcgcgcctcgtggccgtgccgggc
caggaagccgcgccggccgtggaggcgcaggcgtcctccgttgccgacgtggccaatgcc
gcggtcgacgcacccgccgtgccgaaagcgccggtggtgcgcgtgcgcaaggcaaagctg
gacaagggggctgccgccgtcgatccggcgctgccgccgacggcacccgccgccgtcagc
caggtgaccgatgccgccacgctggcgtcgatcgacacgtccggctacctgctgccgtcg
gtgaaggtgccgggacgccgcggccgcaagccaagcgaattcacgcccgagaacgatgaa
gtggcggcgctgaacgccgtcgaacgcgccgaactgaaggccgcctcaaaagcgcgcgag
cgcaaggccaagggcctggatgcactgggcagcgccgaaggcatgtcgcaggaagacctg
gaaaaacgccgccagcagttcaagaacctgatcaacatgggcaaggagcgcggcttcctg
acctatgccgagatcaacgaccagctgcccgagaatatcgtcgatccggaagcgatcgaa
ggcatcatcgccacgttcaacgacatgggcatcgccgtctacgaacgcgcgcccgacgcg
gaaagcctgctgctgtccgacagcgtggccacggccgccagcgacgacgaagtggaagcg
gccgccgcgacggcgctgtccaccgtcgattccgatttcggccgtaccacggacccggtg
cgcatgtacatgcgtgaaatgggcgccgtcgcgctgctgacgcgcgaaggcgagatcgag
atcgccaagcgcatcgaggaaggcctgcgcgacatgatccaggccatctccgcctgcccg
acgacgatcggcgagatcgtcacgctggccgagaagatcgaaagcgacgagatgaaggtc
gacgacgtggtcgacggcttcgtcgatccggaagagaccagcgccccggtggcgccggca
cgcgtcgtcgccagcgtggatgacgacgaggaagagctggaagaagaagaggaagtggac
ggcgacgccaacggcggcgcggccggcttctcgaccgagcagctggcacagctgaaggcc
gacgcgctggagcgcttcgccgtcatcgcggcgcagtacgacaagatgcgcaaggctggt
tatggcagcgcggcttaccagaaggcgcagggcatcatctcggccgaactgctgtcgatc
cgcttcacggccaaggtcgtggaaaagctgtgcgacacgctgcgcggccagatggagcag
gtacgcagcatcgagcgcgccgtgctggagctgtgcgtgaaccgctgcggcatgccgcgc
gcgcacttcatcaaggttttcccgggcaacgagtgcaacctggactgggtcgatggcgaa
gtgggtgccggtcacccgtacagcatcgtcctgggccgcaacgtcccggccatcaaggaa
ctgcagaacaagatgatcgacctgcaggagcgcgtggcactgccgctggccgacctgcgc
aagatcaacaagcagatggccgccggcgagaagcgcgcccgtcacgccaagcgcgaaatg
acggtggccaacctgcgcctggtgatctcgatcgccaagaagtacatcaaccgcggcctg
cagttcctcgacctgatccaggaaggcaatatcggcctgctgaaggcggtggacaagttc
gaataccgtcgcggctataaattctccacgtacgccacgtggtggattcgccaggccatc
acgcgttcgatcgccgatatggcccgcacgatccgcgtgccggtgcacatgatcgagacg
atcaacaagatgaaccgcatcagccgccagatcatgcaggagacgggcagcgagccggac
atggccaccctggcggtcaagatggagatgccggaatcgaaggtgcgcgagatcatgaag
atcgccaaggagccgatttcgatggaaacgccgatgggcgaggatggcgattcgcagctg
ggcgacttcatcgaggacaacaccacgctggccccgctggacgcggcgctgcacgcatcg
atgcgcaacgtgatcaaggaagtgctggactcgctgacgccgcgcgaagcgaaggtgctg
cgcatgcgttatggcgtcgagatgtcgaacgaccacacgctggaagaagtgggcaagcag
ttcgacgtgacgcgcgagcgtatccgccagatcgaagccaaggcgatgagcaagctgcgc
cagccttcgcggtcggacaagctgaagacgttcctgacccagaactga
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