Microbacterium plantarum: VC184_02825
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Entry
VC184_02825 CDS
T09931
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mpln
Microbacterium plantarum
Pathway
mpln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VC184_02825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpln03019
]
VC184_02825
03400 DNA repair and recombination proteins [BR:
mpln03400
]
VC184_02825
Enzymes [BR:
mpln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VC184_02825
Messenger RNA biogenesis [BR:
mpln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VC184_02825
DNA repair and recombination proteins [BR:
mpln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VC184_02825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HEM4
ResIII
DUF3553
PcrA_UvrD_tudor
P-loop_SecA
Cas3-like_C_2
DprA_WH
Glyco_hydro_57
PhageMin_Tail
TniB
Motif
Other DBs
NCBI-ProteinID:
WRK17968
LinkDB
All DBs
Position
603106..604746
Genome browser
AA seq
546 aa
AA seq
DB search
MQPDEIARVARESFGIEELRPQQLDAIEAAVAGRDVLVVWATGAGKSAVYQVAAALRPGL
TAIVAPLIALQEDQLARIEEAPDAPDGVALNSSRGVRAQREAWEAIRSGEASYVLLAPEQ
LAKDDVVAELAKAGVSLLVVDEAHCIAAWGHDFRPDYLMLGEVSERLGRPPILAMTATAT
SPVRTEIIERLGMDDPAILVGDVDRPNIELNVRRHSEKSGKRDAVIDEVVELPKPGLLYT
ATRRGTEEYAEALQERGINAVAYHAGLSAKERHGVHEAFHDGEVEVVVATSAFGMGIDKA
DVRFVVHADIPDSIDAYYQELGRAGRDGEPATATLHYRPEDLSLRRFFAASAPKRGELKR
LVDAIAGATRSRAEIAAAGGLSTRRVTALLTVLVDAGAMRTSRAGVALRRGMTVERAVDA
ALERSAERERIDASRIEMLRSYAETRRCRRATLLGYFGQDYVEPCENCDTCAASANDRAA
REETSEERGGHADGPFRVDDVVRHHEWGEGTVMAVEDDRVTVFFESQGYKVLATELVAER
GLLEPA
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
gtgcagcccgacgagatcgcccgtgtcgcccgagagtccttcggcatcgaggagctgcgc
ccgcagcagctcgatgccatcgaggcggcggtcgccgggcgagacgtgctggtcgtctgg
gcgacgggtgcgggcaagtcggccgtctaccaggtcgctgcggctctccggcccggcctg
accgcgatcgtcgcgcccctcatcgcgctgcaggaggaccagctcgcgcgcatcgaggag
gcgcccgatgcgcccgacggcgtcgccctgaactcgagccggggcgtgcgcgcccagcgc
gaggcctgggaggcgatccggtcgggagaggcctcgtacgtcctgctcgcgcccgaacag
ctcgcgaaggatgacgtcgtcgccgagctcgccaaggccggggtctcgctgctggtcgtg
gacgaggcgcactgcatcgcagcctggggacacgacttccgcccggactacctgatgctc
ggcgaggtctccgagcgtctggggcgaccgccgatcctcgcgatgacggcgacggccacc
agccccgtccgcaccgagatcatcgagcggctcggcatggacgacccggccatcctcgtg
ggcgacgtcgaccggccgaacatcgagctgaacgtccgccgtcactccgagaagtcgggc
aagcgcgacgccgtgatcgacgaggtagtggagctgcccaagccggggctgctgtacacc
gccacccggcgcggcaccgaggagtacgccgaggcgctgcaggaacgagggatcaacgcc
gtcgcgtaccacgccggcctgtcggcgaaggagcggcacggggtgcacgaggcgttccac
gacggcgaggtcgaggtcgtggtcgccacctccgcgttcgggatggggatcgataaggcc
gacgtgcgcttcgtcgtccacgccgacatccccgactccatcgacgcctactaccaggag
ctcggtcgcgccggccgcgacggcgagcccgcgacggcgacgcttcactatcggcccgaa
gacctgtcgctgcgacgtttcttcgcggcgtcggcaccgaagcggggcgagctcaagcga
ctcgtcgacgccatcgccggcgcgacgcggtcgcgcgccgagatcgccgcggccggcggg
ctgtcgacccgtcgcgtgaccgcgctgctgacggttctcgtcgatgcgggcgcgatgcgg
acgagtcgcgccggggtcgcgctgcggcgggggatgaccgtggagcgcgccgtcgacgct
gcgttggagaggtcggccgagcgggaacgcatcgacgcctcccgtatcgagatgctccgc
agctatgccgagacccgtcggtgccggcgggcgacgctgctcggatacttcgggcaggac
tacgtcgagccgtgcgagaactgcgacacgtgcgcggcatccgcgaacgaccgagcggcg
cgcgaggaaacctcggaggaacggggtggtcacgccgacggtcccttccgcgtcgacgac
gtcgtgcgccaccacgagtggggtgagggaaccgtgatggccgtcgaggacgaccgtgtc
accgtgttcttcgaatcgcaggggtacaaggtgctcgccacggagctcgtcgccgagcgc
ggtctgctcgaacccgcctga
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