Microbacterium plantarum: VC184_04765
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Entry
VC184_04765 CDS
T09931
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mpln
Microbacterium plantarum
Pathway
mpln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VC184_04765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpln03019
]
VC184_04765
Messenger RNA biogenesis [BR:
mpln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VC184_04765
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
WRK18329
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Position
1006916..1008592
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AA seq
558 aa
AA seq
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MPTNVFSPPALEPGTLRVYPLGGLGEVGRNMTVFEYEGKLLVVDCGVLFPEEHQPGVDLI
LPDFEPIKHRLDDIVGVVLTHGHEDHIGAVPYLLKLKGDIPLIGSGLTLALIEAKLKEHR
IRPYTLTVTEGQEEQVGPFDLEFIAVNHSIPDALAVAVRTPAGLVLATGDFKMDQLPLDG
RITDLRAFARLGEEGVDLFLVDSTNADVPGFTPTERGIGPVLDQVISKSPRRVIVASFSS
HVHRVQQVVDAAAANGRRVAFLGRSMVRNMTIAENLGYLNVPDGVLIDYKKAKDLPDDRI
VYMSTGSQGEPMAVLSRMANLEHAIEPGPGDTVILASSQIPGNENAIYRVIDGLTKLGAN
VVHKGNAKVHVSGHAAAGELLYCYNILKPRNVLPVHGEYRHLMANAKLAQDTGVPEDRTI
LAENGTVVDLKDGVAEVVGQLDIGFVYVDGSTVGEITDADLKDRRILGEEGFISVIVVVD
GKTGRVVSGPDIHARGVAEDDAVFEGVKPKIAAALAEAVQSGTRDNHALSQVVRRTIGRW
VNQSLRRRPMIVPVVIEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgaacgtcttcagcccgcccgctctcgaacccggaacgctgcgggtgtacccg
ctcggaggcctcggcgaggtcggccggaacatgaccgtcttcgagtacgagggcaagctc
ctcgtcgtcgactgcggcgtgctcttccccgaggagcaccagccgggcgtcgacctgatc
ctgcccgacttcgagccgatcaagcatcgcctcgacgacatcgtcggtgtcgtcctgacc
cacggccacgaggaccacatcggggcggttccctacctgctcaagctcaagggtgacatc
cccctcatcggctcgggactcacgctcgccctcatcgaggcgaagctcaaggagcaccgc
atccgcccctacaccctgacggtcaccgaggggcaggaggagcaggtcggtccgttcgac
ctcgagttcatcgcggtcaaccactcgatccccgacgcgctcgcggtcgccgtccgtacc
cccgcggggctcgtcctcgcgacgggtgacttcaagatggatcagctcccgctcgacggc
cgcatcaccgacctgcgtgccttcgcgcgactgggcgaggagggcgtcgacctgttcctc
gtcgactccaccaacgcggacgtccccggcttcacgccgaccgagcgcggcatcggtccc
gttctcgaccaggtcatcagcaagtcgccgcgccgtgtcatcgtcgcgagcttctcgagc
catgtgcaccgcgtgcagcaggtcgtggatgccgcggccgcgaacggtcgccgcgtcgcc
ttcctcggccgcagcatggtccgcaacatgaccatcgccgagaacctggggtacctcaac
gtccccgacggcgtgctcatcgactacaagaaggccaaggacctgcccgacgatcgcatc
gtctacatgtcgacgggctcccagggcgagccgatggccgtgctctcgcgcatggccaac
ctcgagcacgcgatcgagcccgggccgggagacaccgtcatcctggcgtcgagccagatc
ccgggcaacgagaacgcgatctaccgcgtcatcgacgggctgaccaagctcggcgcgaac
gtcgtgcacaagggcaacgccaaggtgcacgtgtcgggacacgccgccgcgggcgagctg
ctgtactgctacaacatcctcaagccgcgcaacgtgctcccggtgcacggggagtaccgt
cacctgatggcgaacgcgaaactcgcgcaggacaccggcgttccggaggatcgcacgatc
ctggccgagaacggtaccgtcgtcgacctcaaggacggcgtcgcggaggtcgtcggccag
ctcgacatcggcttcgtgtacgtcgacggctcgaccgtgggcgagatcaccgacgccgat
ctcaaggaccgtcggattttgggcgaggaaggcttcatctcggtcatcgtcgtcgtggac
ggcaagacgggacgagtcgtgagcggcccggacatccacgcgcgtggtgtcgccgaggac
gacgcggtgttcgagggcgtcaagccgaagatcgcggctgcgctcgcggaggccgtgcaa
tcggggacgcgagacaaccacgcgctctcacaggtcgtccgccgcacgatcggccgctgg
gtgaaccagtcgctccgacgtcgcccgatgatcgtcccggtcgtcatcgaggcctga
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