Methylorubrum populi: Mpop_1291
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Entry
Mpop_1291 CDS
T00760
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpo
Methylorubrum populi
Pathway
mpo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mpop_1291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpo03400
]
Mpop_1291
Enzymes [BR:
mpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mpop_1291
DNA repair and recombination proteins [BR:
mpo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mpop_1291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
UB2H
RecG_dom3_C
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACB79462
UniProt:
B1ZCV0
LinkDB
All DBs
Position
complement(1388347..1391604)
Genome browser
AA seq
1085 aa
AA seq
DB search
MIPTGALAIALLGFAQTARPLIHVARDGRRLEDVAAVLRALAPERTVAVYPEWDCLPFDR
ASPSRGVMGARTGVLRWLTDEQARPDIVLTTAPALLQRVPPPETWDAAHVELRVGEALDP
ERLTAELGRLGYILDDRVDEPGEVAVRGRTIDVFPAAAPLPCRVEHDGTRITAIRSYDPV
SQRSRVETDRLVIDPATEIILASDSGVALEPFTGQEHRLARFYPKLVTVLDYVPQARFVV
EDGMEERAAAFFEQIAEGSEQDGSNTGNGPDEPRRASAADLYLSPDEWTALVDARSLAVA
TGAEAERVAGPVFARERRPETGFAKALRAALKAGERVVLAGPKAPLRRLVRAAAAIDDRT
VRLIDGWAEVEAAEPGAMLAIEAPVEAGFRVPEAGATVIAAADLFGPLAAGAQRRAAVLP
IGEVELRVGDVAIDRDHGLCVFEGLEAIRAGEEDEEDALRLRFADEAILMVPVSQADRIW
RYGSEAEAVTLDRLDGGTWARRRLEAEATLAKAARAMLKAAQERRKAHAPQIVPPEREME
RFAAGFGFPLTGDQAGAVEETLDDLAREAPMDRLVCGDVGFGKTEVALRAAAAALFAGRQ
VAVMAPTTVLVRQHVETFRRRFARFGIEVAHLSRLVSPAEAKRVKRGLADGSVRLVVGTQ
ALAGRGVAFHDLGLAIIDEEQRFGAKTKASLRKAAGDAHILTLSATPIPRTLQAAMVGLQ
SLSVIATPPAVRQPIRTVIAPFEEATLAAALRREHRRGGQSFVVCPRIEDIAPMAKRLRS
LVPGLAVVIAHGEMKPAEMDDAMVRFADGDGDVLLATSIIESGLDVPRANTMLVWDAERF
GLAQLHQLRGRVGRGQRRGVVYLFGHPDKPLSPSTEKRLRTLEALDRLGAGFAISARDLD
LRGAGDLVGDDQSGHVKLVGLGLYQHLLQLALRAAKGEAAEDWSPEVRIGLNGRVPADYI
PEPEIRLSLYTRLLRLRTEAEIDALRDEIEDRFGPLPGSVEALFTLAALRIGCLALGIAR
LNGGPQGIAADFHPDRTAPVIPVSDDITVREGRIVLRRGGEDPVERGRQAAAFLRRLEEA
RDRRA
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
ttgatccccacaggcgccctcgcgatcgccctgctcggcttcgcccagaccgcccggccg
ctgatccacgtggcccgcgacgggcgccgcctcgaggatgtcgccgccgtcctgcgcgcc
ctcgcgccggagcggacggtggcggtctatccggaatgggattgcctgcccttcgaccgt
gcctcgccctcgcgcggcgtcatgggcgcccgcaccggcgtgctgcgctggctgaccgac
gaacaggcccggccggacatcgtgctcaccaccgcccccgctcttctgcagcgcgtcccc
ccgccggagacgtgggacgcggcccatgtcgagctgcgtgtcggcgaggccctcgatccg
gagcggctgacggccgagctggggcggctcggctacatcctcgacgaccgggtcgacgag
cccggcgaggtcgcggtccgcgggcgcaccatcgacgtgttcccggccgccgcgccgctg
ccctgccgggtcgagcacgacggcacccgcatcaccgcgatccgttcctacgatccggtg
tcgcagcgctcccgggtcgagaccgatcggctggtgatcgaccccgccaccgagatcatc
ctcgcctcggattcgggcgtcgcgctcgaacccttcaccggacaggagcaccggctcgca
cggttctatcccaaactcgtgacggtcctcgactacgtgccccaggcgcggttcgtggtc
gaggacgggatggaggagcgcgccgccgccttcttcgagcagatcgccgagggaagcgag
caggacggctcgaacaccgggaacgggccggatgaaccccgccgggcgtcggcggcggac
ctctacctctcgcccgacgagtggacggcgctcgtcgacgcgcgcagcctcgccgtggcg
acgggcgccgaggcggagcgggtcgccgggccggtcttcgcccgcgagcgccgccccgag
acgggtttcgccaaggccctgcgcgcggcgctcaaggcgggcgagcgcgtggtgctcgcc
ggccccaaggcgcccctgcgccgcctcgtgcgggcggcggccgccatcgatgaccggacc
gtgcgcctgatcgacggctgggccgaggtcgaggcggcggagcccggcgcgatgctggcg
atcgaggcgccggtcgaggcggggttccgcgtgccggaggccggcgcgacggtgatcgcc
gccgccgacctgttcgggcccctggccgcgggcgcgcagcggcgagccgcggtgctgccg
atcggcgaggtcgagctgcgcgtcggcgatgtcgcgatcgaccgcgaccacggcctgtgc
gtgttcgaggggctggaggcgatccgcgccggcgaggaggacgaggaggacgccctgcgc
ctgcggttcgccgacgaggccatcctgatggttccggtgagccaggccgaccggatctgg
cgctacggctcggaggccgaggccgtgacgctcgaccggctcgacggcggcacctgggcc
cggcggcgcctggaggcggaggcgacgctcgccaaggccgcgcgggcgatgctgaaggcg
gcgcaggagcgccggaaggcgcatgcgccgcagatcgtgccgccggagcgcgagatggag
cgcttcgccgccggcttcggcttcccgctcaccggcgatcaggccggtgcggtggaggag
accctggacgacctcgcccgcgaggcgccgatggaccggctggtctgcggcgatgtcggc
ttcggcaagacggaggtggcgctgcgtgccgccgccgcggcgctcttcgccggccggcag
gtcgccgtcatggcgccgaccacggtgctggtgcgccagcatgtcgagacgtttcggcgg
cggtttgcccgtttcggcatcgaggtggcgcatctctcacgcctcgtctcccccgccgag
gccaagcgggtaaagcgggggctggccgacggcagcgtgcgcctcgtggtcggcacccag
gcgctcgccgggcgcggcgtcgccttccacgatctcgggctcgccatcatcgacgaggag
cagcgcttcggggccaagaccaaggcgagcctgcgcaaggcggcgggcgatgcccacatc
ctgaccttgagcgcgacgccgatcccgcgcacgctccaggcggcgatggtcggcctgcag
agcctcagcgtcatcgccacgcccccggcggtgcgccagccgatccgtacggtgatcgcc
ccgttcgaggaggcgacgctggccgcggccctgcggcgcgagcatcgccgcggcggccag
agcttcgtggtctgcccgcgcattgaggacatcgcgcccatggccaagcgcctgcgcagc
ctcgtgccggggctcgcggtcgtgatcgcgcacggcgagatgaagccggccgagatggac
gacgccatggtccgcttcgccgacggcgacggcgacgtgctgctcgccaccagcatcatc
gagagcggcctcgacgtgccgcgggccaacaccatgctggtctgggacgcggagcggttc
ggcctcgcgcagctgcaccagttgcgcggccgggtcgggcgcgggcagcggcgcggggtg
gtctacctgttcgggcatcccgacaagcccctcagcccctccaccgagaagcggctgcgc
acgctggaggccctcgaccggctcggcgcgggattcgccatctccgcccgcgacctcgac
ctgcgcggtgcgggcgatctcgtcggcgacgaccagtcgggccatgtcaagctcgtcggt
ctcggcctctaccagcacctgctgcaactggcgctccgcgcggccaagggcgaggcggcc
gaggattggagcccggaggtgcggatcggcctgaacggccgtgtgcccgccgactacatc
ccggagcccgagatccgcctgagcctctatacccgcctgctgcgcctgcgcaccgaggcc
gagatcgacgccctgcgcgacgagatcgaggaccggttcgggccgcttcccggttcggtg
gaggcgctgttcacgctggccgccctgcggatcggatgcctcgccctcggcatcgcccgc
ctcaatggcggaccgcaggggatcgcggccgatttccatccggaccggaccgcgccggtg
atcccggtgtccgacgacatcacggtgcgcgagggccgcatcgtcctgcgccgggggggc
gaggatccggtcgagcgcggacgtcaggccgcggcgttcctgcgccggctcgaagaggca
cgcgaccggcgcgcctga
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