Methylorubrum populi: Mpop_3946
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Entry
Mpop_3946 CDS
T00760
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mpo
Methylorubrum populi
Pathway
mpo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mpop_3946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpo03019
]
Mpop_3946
03009 Ribosome biogenesis [BR:
mpo03009
]
Mpop_3946
Enzymes [BR:
mpo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Mpop_3946
Messenger RNA biogenesis [BR:
mpo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mpop_3946
Ribosome biogenesis [BR:
mpo03009
]
Prokaryotic type
rRNA processing factors
Mpop_3946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACB82073
UniProt:
B1ZAL7
LinkDB
All DBs
Position
complement(4201234..4204431)
Genome browser
AA seq
1065 aa
AA seq
DB search
MANNKMLIDATHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRA
EARGSRHDDTVKSQEAIAETVSENDAIPGEGQAADAPAPEAIEAVRAALVEERPLGDEPA
AESNPESSAEPVETGGDASASLPEAALAPGAPAGDAPAEPAAESGEAPAAPAATVEPSDI
AAISEAPNPPVEAAESADAAETVEPQPVAASAPVSETVEMDEDEDSDDASEDDESDEDED
DEDSDEDESDDDDDDSDDEEEDEESEDGEARVAQVGGAGDALAEIPERPRAYRRHYKIQE
VIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITSAADRKRL
KEVVADLDVPEGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELTLSSTAPALVYEEG
SLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPYRDPTPIFARYGVE
QQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTALKTNLEAAEEVAR
QVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRARIQVGRISPFGLLEMSRQRI
RTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEALLKSSSHNLVLRTRTEVALYIL
NQKRAHLYDLEQRFSVAITISADERLAATAAFQLDRGEPAVKHVGPATGVRAVAISPVYE
AEEFEDEVLESEDDLRDGEEARADEPRGERSADEAEAEGGEGRAEGSEEGGGRRRRRRRR
RGGRSSGEEARAQDGQEPENESGNGSDAESDGSEDGDEAPESEAADEVAGAGAERDETVS
EAGEAPGEANGEDEGNGRRRRRGRRGGRGRGRNERSERQDSEFDDEAGEARAAETHPQET
HPQETHPEETASDALPVGPEEPVSDADVTAVSLAAGNGAAAEPPPVVPAPEPEPIQAESV
AQAASEAAAPEPAPEPVAVVLTPPDPNRPKRAGWWSRTKAALSGE
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacaagatgctcatcgacgcgacgcatccggaggagacccgggtcgtcacc
gtccaaggctcgcgggtcgaggaattcgatttcgaggcggccaaccgccggcctctgaga
ggcaacatctatctcgccaaggtcacccgcgtggagccctcgctccaggcggccttcgtc
gagtacggcggcaaccgccacggcttcctcgccttcaacgagatccaccccgactactac
cagatcccgatggccgaccgcctcgcgctgatcgaggccgaggcgcgcgaggaggaggag
caccgcgagcgcgaggagcgccgtccgccgcggggccgccgctcgcgcggacgccgggcc
gaggcccgcggctcgcgccacgacgacacggtgaagtcgcaggaggcgatcgcggagacc
gtttccgagaacgacgcgatccccggcgagggccaagccgccgacgcgcccgcgccggag
gcgatcgaggctgtgcgcgccgccctcgtcgaagagcggcccctgggcgacgagcccgcc
gccgaatcgaatcccgaatccagcgccgagccggtcgagaccggcggcgacgcctccgcg
agcctgcccgaagcggcgctggcgccgggcgcgcccgcgggcgacgcaccggccgagccg
gccgccgagtccggcgaggctcccgccgcgccggctgccacggtcgagccgtccgatatc
gccgcgatctccgaggcccccaatccgccggtcgaggccgcggagtccgcggatgccgcc
gagacggtcgagccgcagcccgtcgccgcctccgcaccggtctccgagaccgtggagatg
gacgaggacgaggattccgacgacgcgtccgaggacgacgagtccgacgaggatgaggac
gacgaggattcggacgaggacgagtccgacgacgatgacgacgattcggacgacgaggaa
gaggacgaggaatccgaggacggcgaggcgcgggtcgcgcaggtcggcggcgcgggcgac
gcgcttgccgagatccccgagcgcccgcgcgcctatcgccgccactacaagatccaggag
gtgatcaagcgccgccagatcatcctcgttcaggtcgtcaaggaagagcgcggcaccaag
ggcgcggcgctcaccacctacctatcgctcgccggccgctactcggttctgatgcccaac
accggtcgcggcggcggcatctcccgcaagatcacctcggccgccgaccgcaagcgcctg
aaggaggtcgtggccgacctcgacgtgccggaggggatggggatcatcctgcgcacggcc
ggcgcctcgcgcaccaagccggagatcaagcgcgacttcgagtacctgatgcgcctgtgg
gagagcgtgcgcgagctgacgctgtcctccaccgccccggcgctcgtctacgaggagggc
tcgctgatcaagcgggcgatccgcgacctctacaacaaggatctcgacgaggttctggtc
tccggcgaggacgcctaccgcgaggccaaggacttcatgcggatgctgatgcccggccag
tcgaaggtggtgaagccctaccgcgacccgacgccgatcttcgcccgctacggcgtcgag
cagcagctcgacgcgatgttctcgacccacgtggcgctgcgctccggcggctacctcgtc
atcaacccgaccgaggcgctggtctcgatcgacgtgaactcgggccgcgccacccgcgag
cacgacatcgaggacaccgcgctcaagaccaacctcgaggcggcggaagaggtcgcccga
caggtgcgcctgcgcgacctcgccggcctcgtcgtgatcgacttcatcgacatggaggag
aagcgcaacaaccgggcggtggagaagcggctcaacgaggcgctgaagaacgaccgggcg
cgcatccaggtcgggcggatctcgcccttcggcctcctggagatgagccgccagcgcatc
cgcaccggcgtgctcgaatcgtcctcgatcccctgcgcccattgcggcggctcgggcttc
gtgcgggcgacctcctcggtggccctgcacatcctgcgctcgatcgaggaggcgctgctc
aagtcgtcgagccataacctcgtgctgcgcacccgcaccgaggtggcgctctacatcctc
aaccagaagcgggcgcatctctacgacctcgagcagcgcttctccgtggcgatcaccatc
tccgccgacgagcggctggcggcgaccgcggcgttccaactcgaccgtggcgagccggcg
gtgaagcatgtcggcccggcaacgggcgtgcgtgcggtcgcgatctccccggtctacgag
gccgaggagttcgaggacgaggtgctcgagtccgaggacgatctgcgggacggcgaagag
gcccgagcggacgagccgaggggcgagcggtctgccgacgaggccgaggccgagggcggc
gaaggccgtgcggagggctccgaggagggcggcgggcgtcgccgtcgccgtcgccgtcgc
cgcggcgggcgttcctccggtgaggaggcccgcgcgcaggacgggcaagagcctgagaac
gagtccgggaacgggtcggacgccgagtcggatgggtccgaggacggcgacgaggctccc
gaatccgaggccgccgacgaggtggctggcgccggggccgagcgggacgaaaccgtgtcc
gaggccggcgaggcccctggtgaggccaacggcgaggatgagggcaacggacgccgccgc
cgccgcgggcgccggggcggccggggccgcggccggaacgagcgcagcgagcgtcaggat
tccgagttcgacgacgaggccggcgaggcgcgggctgcggagacacatccccaggagacg
catccccaggagacacatcccgaggagaccgcctccgacgccctgccggtcggccccgag
gagccggtcagcgatgccgacgtgaccgccgtctcgctcgccgccggcaacggtgccgcg
gccgagccgcccccggtcgtgcccgcgccggagcccgagccgatccaggccgagtccgtc
gcgcaggccgcgtccgaggcggcggcccctgaacccgcgccggagccggtcgcggtggtg
ctgacgccccccgatccgaaccgccccaagcgggccggctggtggtcgcgcaccaaggcg
gcgctgtcgggagagtag
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integrated database retrieval system
