Methylorubrum populi: Mpop_4676
Help
Entry
Mpop_4676 CDS
T00760
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpo
Methylorubrum populi
Pathway
mpo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mpop_4676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpo03400
]
Mpop_4676
Enzymes [BR:
mpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mpop_4676
DNA repair and recombination proteins [BR:
mpo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mpop_4676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
AAA_16
SecA_DEAD
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACB82772
UniProt:
B1ZIT3
LinkDB
All DBs
Position
4992301..4995903
Genome browser
AA seq
1200 aa
AA seq
DB search
MAKPQPKPQSKPSAPKPQTARFALPKSAPLTKALDAIRRGDSPTLASVPDGFDALVAADL
ARALSSTFEGPAVLVHVARDSGRSNAFQNALKFVAPEIEAMSFPAWDCQPYDRVSPNAAI
AAQRMTALSRLTRSRSSEEKPRILCTTVNALVQRVPPRARVAVETFSAAIGNVVPMDKVV
AWVEANGFLRTGTVRDTGEYAVRGGILDLSPPGLPNPIRLDFFGDTLESIRAFDPETQRT
VGSLRSLDLVPMSEVQLTTETIRRFRQGYLSSFGAATRDDRLYETVSEGRRYAGLEHWMP
LFYDGLDTLFDYLGDVPMLFDPQVEEAAAERLSLIQDYFQAREAALKNPQSGVAPYKPLP
PRALYLTPNEWKGKVEAGTVARLTPFAQPDSEERAVIDCGARAGRNFAPERADEAASVFD
AAVAHIRDLQASGHHVILGSWSDGSRDRLCGVLTDHGLKKPIEINSFTAVNALKRGTDVA
VAVWGLEAGFTLDKLAVVAEGDILGDRLVRQKRKSKRPQDIILEVQALQPGDLVVHADHG
IGRFVGLKTVTAAGAPHDCLELQYAGGLLLLPVENIELLTRYGSEDSEVALDRLGGGAWQ
ARKAKMKRRILEMAGELIKVAAARFVKPAPSLKAPEGLYEEFAARFAFQETEDQANAIDA
VLDDLNAGRPMDRLVCGDVGFGKTEVALRAAFAAAISGKQVAVVVPTTLLARQHYRTFAE
RFKGLPINVAQLSRFVSAGDQRQTRAGLAEGKVDIVVGTHALLAKNVAFKDLGLIIVDEE
QHFGVAHKERLKALQADVHVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLAVRTFVT
PFDPLLIREALLRERYRGGQAFYVVPRIEDLAEVKRFLDQEMPEVTVAVAHGQMAAGQLE
DVMTAFYEGKYDVLLSTTIVESGLDIPTANTLIVHRADMFGLAALYQLRGRVGRSKARAY
ALFTTPANRQLTAQAEQRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDAQSGHIKEVG
YELYQQMLEDAVTALKAGIEEPVEEAWSPTIALGAPVTIPEDYVEDLTVRLGLYRRLSTI
ENDAEMESFGAELIDRFGPLPPEVEQLLKIVTIKILCREANVEKVEAGPKGVVVHFRDKS
FANPQGLAAMVVEQGSFAKVRPDMSVVFIRELDGIPKRLKETTQIMRGLVTIAKRAKKAA
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggccaagccccaacccaagccccaatccaagccgtctgcgccgaagccgcagaccgcg
cgcttcgccctgccgaaatcggcgccgctgaccaaggcgctcgatgcgatccgccgcggc
gacagcccgacgctggcctccgtgcccgacggcttcgacgcgctggtggcggccgacctc
gcacgcgccctgtcgagcaccttcgaggggccggcggtgctggtccatgtcgcccgcgat
tcggggcgttccaacgccttccagaacgcgctgaagttcgtcgctcccgagatcgaggcg
atgagcttcccggcctgggactgccagccctacgatcgcgtctcgccgaacgccgcgatc
gccgcgcagcgcatgaccgcgctctcgcggctgacccgctcacgctcgtccgaggagaag
ccgcgcatcctctgcaccacggtgaacgccctggtgcagcgggtgccgccccgcgcccgg
gtcgcggtcgaaacgttttcggcggcgatcggcaacgtggtgccgatggacaaggtcgtc
gcctgggtcgaggccaacggcttcctgcgcacgggcacggtgcgggataccggcgaatac
gccgtgcgcggcggcattctggacctgtcgccgcccggcctgccgaacccgatccgcctc
gatttcttcggcgacaccctcgaatcgatccgcgccttcgatccggagacgcagcgcacg
gtggggtccttgcgctccctcgacctcgtgccgatgagcgaggtgcagctcaccaccgag
acgatccggcgcttccgccagggctacctgtcgagcttcggcgcggcgacccgcgacgac
cggctctacgagacggtgagcgagggacggcgctatgccggcctcgagcactggatgccg
ctgttctacgacggcctcgacaccctgttcgactatctcggcgacgtgccgatgctgttc
gatccgcaggtcgaggaggcggcggccgagcggctctccctgattcaggactatttccag
gcccgcgaggcggcgctgaagaacccgcaatcgggcgtggcgccctacaagccgctgccg
ccccgcgccctctatctcacgccgaacgagtggaaggggaaggtcgaggccggcacggtc
gcccggctcacccccttcgcgcagccggattcggaggagcgcgccgtgatcgattgcggc
gccagggccggccgcaacttcgcgcccgagcgggccgacgaggcggccagcgtgttcgac
gcggcggtcgcgcatatccgcgacctgcaggcatccgggcatcacgtgatcctgggatcc
tggtccgacggctcccgcgaccggctctgcggcgtgctgaccgatcacggcctgaaaaaa
ccgatcgagatcaacagcttcactgccgtgaacgcgttgaagcgcggcaccgacgtggcg
gtggcggtctgggggcttgaggcgggcttcacccttgacaagctggcggtcgtggccgag
ggcgacatcctcggcgaccggctggttcgccagaagcgcaagtcgaagcgcccgcaggac
atcatcctggaggtgcaggcgctccagcccggtgatctcgtggtccatgccgaccacggc
atcggccgcttcgtcggcctcaagacggtgacggcggcgggcgccccgcacgactgcctg
gagctgcaatatgccggcggcctgctgctgctgccggtggagaacatcgagcttctgacc
cgctacggctcggaagactcggaggtcgccctcgaccgcctcggcggcggggcgtggcag
gcccgcaaggccaagatgaagcgccgcatcctcgagatggcgggcgaactcatcaaggtc
gccgccgcccgcttcgtgaagcccgcgccctcgctcaaggcgccggaaggcctgtacgaa
gaattcgccgcgcgcttcgccttccaggagaccgaggatcaggccaacgccatcgatgcg
gtgctcgacgacctcaatgcggggcggccgatggatcggctcgtctgcggcgatgtcggc
ttcggcaagacggaggtggcgctccgcgccgcgttcgccgcggcgatctccggcaagcag
gtggcggtggtggtgccgacgacgcttctcgcgcgccagcattaccggacgtttgccgag
cggtttaagggcctgccgatcaacgtggcgcagctctcccgcttcgtctccgccggcgat
cagcgccagacgcgcgccgggctcgccgagggcaaggtcgatatcgtcgtcggcacccat
gcgctgctggccaagaacgtcgcgttcaaggatctcggcctcatcatcgtcgacgaggag
cagcatttcggcgtggcccacaaggagcggctcaaggcgctccaggcggatgtccacgtg
ctgacgctctcggcgacgccgatcccgcgcacgctccagctcgccatgacgggcgtgcgc
gaactctcgatcatcgccacgccgccggtggatcggctggccgtacgcaccttcgtgacg
ccgttcgatccgctgctgatccgcgaggcgctgctgcgcgagcgctaccgcggcggccag
gcgttctacgtcgtgccccgcatcgaggatctggccgaggtcaagcgcttcctcgatcaa
gagatgcccgaagtcacggtggcggtcgcccacggccagatggcggcggggcagctcgag
gacgtgatgacggccttctacgagggcaagtacgacgtgctgctctcgaccaccatcgtc
gaatccggcctcgacattccgaccgccaacacgctgatcgtgcaccgggccgacatgttc
ggactggccgcgctctaccagctgcgcgggcgcgtcggccgctccaaggcgcgggcctac
gcgctgttcaccaccccggccaaccgccagctcacggcccaggccgagcagcggctcaag
gtgctgcagagcctcgacacgctgggcgccggcttccagctggcctcccacgacctcgac
atccgcggcgccggcaaccttctgggcgacgcccagtccggccacatcaaggaagtgggc
tacgaactctaccagcagatgctggaggacgcggtcaccgcgctcaaggccggcattgag
gagccggtggaggaggcgtggtcgccgaccatcgcgctcggcgcccccgtcacgatcccc
gaggattacgtcgaggatctcaccgtccggctcggcctctaccggcgcctctcgacgatc
gagaacgacgccgagatggagagcttcggcgccgagctgatcgaccgtttcggcccgctg
ccgccggaggtggagcagctcctcaagatcgtgaccatcaagatcctgtgccgcgaggcg
aatgtcgagaaggtggaggcgggcccgaagggcgtcgtggtccacttccgcgacaagtcc
ttcgccaacccgcaggggctcgccgcgatggtcgtggagcagggctccttcgccaaagtg
cggccggacatgagcgtcgtcttcatccgcgaactcgacggcatcccgaagcgcctgaag
gagacgacgcagatcatgcgcgggctcgtgaccatcgccaaacgggcgaagaaggcggcc
tga
DBGET
integrated database retrieval system
