Methylocapsa polymorpha: RZS28_02500
Help
Entry
RZS28_02500 CDS
T11074
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mpol Methylocapsa polymorpha
Pathway
mpol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RZS28_02500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpol03019
]
RZS28_02500
Enzymes [BR:
mpol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RZS28_02500
Messenger RNA biogenesis [BR:
mpol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RZS28_02500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ATP-grasp
Utp25_C
SMC_N
Motif
Other DBs
NCBI-ProteinID:
WOJ90194
UniProt:
A0ABZ0HUG4
LinkDB
All DBs
Position
506464..507900
Genome browser
AA seq
478 aa
AA seq
DB search
MQDFNGLGLAAPLLRALSQQGYSRPTPIQAQAIPNIMAGRDLVGIAQTGTGKTAAFALPI
LHHLATHERPAPRGGCRVLVLSPTRELASQIAESFRSLGAGLRISVAVVFGGVPHGAQIK
ALARGLDILVATPGRLVDHLDSRAAHLGKTEFFVLDEVDQMLDLGFVKAIRRVVGDLPKQ
RQNLFFSATMPSEIAKLAGDLLNDPVQVSVTPIAKTADRVNQQVLFVETHRKRDILVELF
ADAQMTRAIIFTRTKRGADKVTQHLDAVGIAALAIHGNKSQSQRERSLAAFRTGRVRALV
ATDIAARGIDIDGVTHVVNFELPEVAEAYVHRIGRTARAGAEGTAISLCDNAERELLRNI
EKLTRLRLPALDRRANPSMARPIGTRARAGARRRSRRIWAPNRSRTLRPPIIGRTIAGPA
RGLQPHRTKVTPRPDRTGPASDRRLERANRVAAAMAQRHRCSASRRRDASMPSSRKSN
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagatttcaacggtctcggccttgccgcgccgcttcttcgtgctctctcacaacaa
ggctactcccgtccgacgccgatccaggcgcaagctattccaaacatcatggcaggccga
gacctcgtcggaatagctcagaccggaaccggcaaaaccgccgccttcgctctgccaatt
ctccatcatctcgcaacccatgagcgtccggcgccgcgcggcggctgccgcgtgctggtc
ctgagcccaacgcgcgaacttgcgagccagatcgccgaaagcttccgcagccttggcgcg
ggcttgaggatttccgtcgccgtcgttttcggcggggtgccgcatggcgctcagatcaag
gcgctcgcgcgcggcctcgatattctggtcgcaacccccggccgtctagtcgaccatctt
gactcccgcgccgcgcatctcggcaagaccgagtttttcgtcctcgacgaggtcgatcaa
atgctcgatcttggtttcgtcaaggcgatccgccgcgtcgtcggcgatctcccgaagcag
cgccagaacctgtttttctcggcgaccatgccaagtgaaatcgccaagctcgccggcgac
ctgctcaatgatccggtccaggtttccgtcaccccgatcgcgaaaaccgccgatcgcgtc
aatcagcaggttctcttcgtcgaaacccatcgcaagcgcgatattctcgtcgaactcttc
gccgacgcgcaaatgacgcgggcgatcatcttcaccagaacgaaacgcggcgccgacaag
gtcacccagcatctcgacgccgtcggaatcgctgctttggcgatccacggcaataaaagc
caaagccagcgcgaacgttcgctcgcggccttcaggaccggccgcgtccgggccttggtc
gcaaccgacattgcggcgcgcggaatcgacattgatggcgtgacccatgtcgtcaatttc
gagctgccggaagtggcggaagcctatgtccatcgcatcggccgcacggcgcgcgcgggc
gccgaaggaaccgcgatctcgctttgcgataacgctgagcgcgaactcctgcgcaatatc
gagaagctgacccggctgcggctgccggcgctcgaccggcgggccaacccgagcatggct
cggccaatcgggacgcgcgcgcgcgccggcgcgcgccggcgaagccgccggatatgggcg
ccgaaccgctctcgaacgctccggccgcccatcatcgggcgaacgatcgccggaccggcg
cgcgggctccagccgcatcgcacgaaagtcacgcctcggccggaccggaccggccccgct
tcggatcgtcgactcgaaagagcgaaccgcgtcgcggcggcgatggcgcagcgccatcgc
tgtagcgcatcgcgccggcgagacgcctccatgccgtcaagtcgcaagtcaaattga
DBGET
integrated database retrieval system
