Methylocapsa polymorpha: RZS28_10595
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Entry
RZS28_10595 CDS
T11074
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mpol Methylocapsa polymorpha
Pathway
mpol03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mpol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RZS28_10595 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpol03400
]
RZS28_10595 (ligD)
Enzymes [BR:
mpol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RZS28_10595 (ligD)
DNA repair and recombination proteins [BR:
mpol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RZS28_10595 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
HPS3_C
Motif
Other DBs
NCBI-ProteinID:
WOJ88291
LinkDB
All DBs
Position
2300839..2303535
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AA seq
898 aa
AA seq
DB search
MQESKLAKYRSKRDFSKTVEPAGETEIVGLRRRRFVIQKHAATRLHYDLRLELDGVFKSW
AVTRGPSLDPHDKRLAVEVEDHPLEYGDFEGAIPKGQYGGGTVQLWDRGYWEPEDTKSPE
EALARGELKFLLYGERLRGSWVLVRMKHDRNRGKRTNWLLIKHIDQYAREGDADAMLAED
RSVASGRAMAEIASGQGRGPKPFMLVGKGSGDPGAIWDARKDSASDKGVARKSVAKTSLK
TSMRPRSASLPDFIPPQLCQPVKRPPAGGGWAHEIKFDGYRVQLRVEGGKVTLRTRKGLD
WTGRFAAIAQEAKSFPDVIMDGEIVALGEKGAPDFAALQAALSEGKTDNLIFYAFDLLFE
GETDWRPRPLSRRKDRLRELISAQGRGEAELIRFVEHFETGGDAVLKSACRLLLEGIVSK
KLDAPYQSGRSGTWTKAKCRAGHEVVIGGWTTTNGKFRSLLVGVNHRGRFVYIGRVGTGY
GKAKIEKLLPRLKEVATSNSPFAGAGAPRKDATINWTRPELVAEIEFAGWTGDGMVRQAA
FKGLREDKPASEVEVESPAPAAETDVPEPSVKTKARGRHSAAADKPANAGKPNRPIVMGV
LISNPNKALWPDGGDGAPVAKLDLARYFEAVGPWMIGHIRGRPCSLVRAPDGIEGQQFFQ
RHAMTGASSLLDLVTVFGDRTPYLEIDRIEGLAAVAQIAGLELHPWNCEPNRPETPGRLV
FDLDPGPDVPFSSVVEAAREMRDRLDSLGLVAFCKTTGGKGLHVVAPLAVAKNTKLTWPE
AKEFARELCRRMASDKPQLYVVNMAKKLRTGRIFLDYLRNDRMATAVAPLSPRARPGATV
SMPLTWMQVKADLDPKRFTIRSAPGLIGKSKAWADYCGGQRSLETAIKKLGRSVIAAA
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagaaagtaaacttgcgaaatatcgctccaagcgagatttcagcaaaacggttgag
ccggccggagagaccgagattgtcggtctgcgccgccgtcgcttcgtaattcagaaacat
gccgcgactcggcttcactacgaccttcggctggagctcgatggcgtctttaaatcctgg
gccgtgacgcgagggccttcgcttgatccccatgataagcgactcgcggtggaggtcgaa
gatcatccgcttgagtatggcgacttcgaaggggcgatacccaagggccaatatggcgga
ggaacggtccagctgtgggatcgcggctattgggagccggaggatacgaagagtccggaa
gaggcgctggcgcgcggcgaattgaagtttctgctttacggggagcgtctccgtgggagc
tgggtcctggtgcgcatgaagcatgaccgaaacaggggtaagcgcaccaactggctgctt
atcaagcacatcgaccaatatgcgcgggaaggcgacgccgacgctatgctcgcggaggat
cgctcggtcgcctccggccgcgccatggcggagatagcgtcggggcagggtcggggccca
aagccgttcatgctggttggaaaagggtcgggtgacccgggcgccatctgggacgcgcgc
aaggattcggcgtccgacaaaggagttgcacgaaaatctgtggctaagacttcgttaaag
acatcgatgcggccgcgctccgcgagtcttccggatttcattccgcctcagctgtgccag
ccggtcaagagaccgccagcaggcggcggatgggcgcacgagataaagttcgacggctat
cgcgttcaattgcgcgtcgaaggtggaaaagtcacgttgaggacgcgcaagggcctggac
tggaccgggaggttcgcggcgatagcccaagaggcgaaatcctttcctgatgtcatcatg
gacggcgagatcgtcgcgctcggcgagaagggcgctccagattttgcggctctgcaagcg
gcgttgtcggagggaaagaccgacaatcttattttttacgccttcgatcttttgttcgaa
ggtgaaactgattggcgccctcggccgctgtcgagacgcaaagatcgtcttcgggagctg
atttcagcacagggccgcggcgaagccgaacttatccggttcgttgaacatttcgagacg
ggcggtgatgctgtgctcaagtcggcttgccggctgcttttggagggcattgtctcgaag
aagctggatgcgccttaccagtcgggtcgttcggggacctggacgaaagccaaatgcagg
gctggccacgaggttgtcatcggaggatggacgacgaccaatggcaagtttcgttcgttg
cttgtcggcgtcaatcaccgcggccggttcgtttatatcggtcgtgtcggaactgggtat
ggcaaggcaaaaatcgaaaagcttctcccgcggctaaaagaggttgcgacgtccaattca
ccttttgccggggccggagcgccgcgcaaggatgcaaccatcaattggacgcggccggag
ctcgtcgcggagatcgagtttgctggctggacgggggacggcatggtgcgtcaagccgcc
ttcaaggggctgcgtgaagacaagcccgcttccgaagttgaagtcgagtcgcccgcgccg
gcggctgaaacggatgttccggaaccgagcgtaaaaaccaaggcccggggtaggcattcc
gccgccgcggataagccggccaacgccggcaagccaaacagaccgatcgtgatgggcgtt
ttgatctccaatccgaacaaagcgctatggcctgacggcggtgacggagcgccggtcgcc
aagctcgacctcgcccgctatttcgaggccgtggggccctggatgatcggccatatccgc
gggcgcccgtgctcgcttgttcgcgctccagacgggatcgaggggcaacaattcttccaa
cgtcatgcaatgactggcgcgtcgagtctcctcgatcttgtcactgtattcggagaccgc
acgccctatctcgagattgaccgaatcgagggtttggccgcggtcgcgcaaatcgccggg
ctcgagcttcatccgtggaattgcgaaccaaaccgccccgaaactccaggccgcttggtt
ttcgatctcgacccaggaccagatgtcccgttttccagcgttgtcgaggccgctcgagaa
atgcgcgacaggctggactctttggggctcgtcgccttctgcaaaacgactggcggaaag
ggccttcacgttgttgcgccgctcgcggtggcgaaaaacaccaagctgacctggccggag
gcgaaggagtttgcacgcgagctttgtcgacgcatggcgagcgacaagccccagctctat
gtcgtcaacatggccaagaagctgcggacgggccgtatttttctcgactatcttcgcaat
gaccgcatggcgacagcggtcgcgccattgtcgccccgagcccggccgggcgctacggtt
tcgatgccgctgacctggatgcaggtgaaggccgacctcgatcccaagaggttcactatc
cgcagcgcgccaggtcttattggcaaaagcaaagcctgggcggattattgcggcggtcag
cggtcgctggaaacggcgatcaagaagcttggccgatctgtgatcgccgcagcgtga
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