Methylocapsa polymorpha: RZS28_18225
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Entry
RZS28_18225 CDS
T11074
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mpol Methylocapsa polymorpha
Pathway
mpol03420
Nucleotide excision repair
mpol03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RZS28_18225
03430 Mismatch repair
RZS28_18225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpol03400
]
RZS28_18225
Enzymes [BR:
mpol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RZS28_18225
DNA repair and recombination proteins [BR:
mpol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RZS28_18225
MMR (mismatch excision repair)
Other MMR factors
RZS28_18225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
AAA_11
DUF3553
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
WOJ89690
LinkDB
All DBs
Position
complement(3964938..3967196)
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AA seq
752 aa
AA seq
DB search
MNAEQRAAVEAMDGPVLVLAGAGTGKTRVLTTKIAHIISQGRARAHEILAVTFTNKAARE
MRERVAALAGPVAEGMPWLGTFHAISTKILRRHAELVGLKSSFTILDTDDQIRLLKQVLQ
AENVDDKRWPARALAYQIDAWKNRGLDPAHVPAGEAAAFANGKGGLLYALYQERLKVLNA
ADFGDLLLESLRLLRDNPDVLKQYQDRFHYMLVDEYQDTNSVQYLWLRLLAQGRRNVCCV
GDDDQSIYGWRGADVDNILRFETDFPGAKIIRLERNYRSTGHILSVAASLIAHNQGRLGK
TLFTDGELGEKPTVAGVWDSEEEARAIGEEIEQLTRAGHGFEEIAILVRASFQMREFEER
FITLGLPYRVIGGPRFYERAEIRDALAYLRCVAQPADDLAFERIFNLPKRGLGDATLQLL
YDHARRERIPLMRAAQNMVETEELKPKQRQTLRSLLTDFVRWAALIDVKPQGELAEIILE
ESGYTDMWRKDRTAEAAGRLENLKELVRSMEEFPDLAGFLEHISLVMEAENKDAEARLSI
MTLHAAKGLEFETVFLPGWEEGLFPHQRSLDESGRAGLEEERRLAYVGLTRAKLRAKIYF
ATNRRIHGLWQTTIPSRFLDELPADHVDVVEAASGSAYGGYAQSRFANMDSYASSYSTPG
WQRAQQRRAEDAKQGQDKGSSFKESRARRGPMQIEGELVASSGASSAFAIGARVFHVKFG
YGEVAAVDGNKLTVDFDKAGRKMVLESFVQAG
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgccgagcagcgcgctgctgtcgaggcgatggatgggccggttctggtgctcgcc
ggcgcgggcacgggcaagacgcgggttctcaccacgaaaatcgcccatatcatcagccaa
ggccgcgcccgcgcgcatgagatcctggccgtcaccttcaccaataaggccgcgcgggaa
atgcgggagcgcgtcgccgcgctcgcgggccccgtcgccgaaggcatgccctggctcggc
acgtttcacgccatttcgaccaagatcctgcgccgccacgccgaactggtcggcctcaaa
tccagcttcaccattctcgacacggacgaccagatccgcttgctgaagcaggtcctgcaa
gccgagaacgtggacgataaacgttggcccgcccgcgcgctcgcctatcaaatcgacgcc
tggaaaaatcgcgggctcgatccggcgcatgtgcccgcgggcgaggccgccgctttcgcg
aatggcaagggcggcctgctctatgcgctgtatcaggagcgtttgaaagttctgaacgcc
gccgatttcggcgatcttctgctggaatccttgcggctgctccgcgacaatcccgatgtc
ctgaaacaatatcaggaccgtttccactacatgctcgttgatgaatatcaggacaccaac
agcgtccaatatttgtggttgaggcttctcgcgcaggggcggcgcaatgtctgctgcgtc
ggcgacgacgatcagtcgatctatggctggcgcggcgccgatgtcgataatattctgcgg
ttcgaaacggattttccgggcgccaagatcatccggctcgaacgcaattaccgctccacc
ggccatattctgagcgtggccgcctctctcatcgcacataaccagggacgcctcggcaag
accctcttcactgatggcgagctcggcgaaaagccgaccgtcgccggcgtctgggattcg
gaagaggaggcccgcgcgattggcgaagagatcgagcaattgacgcgcgcgggccatggt
ttcgaggagatcgctatcctggtgcgcgcctcgtttcagatgcgcgaattcgaggagcgc
ttcatcactttgggtctgccttaccgcgtgatcggcggcccgagattctacgaacgcgcc
gaaattcgcgacgcgctcgcctatctgcgttgcgtcgcgcagccggccgatgatctcgcc
ttcgagcgcatcttcaatctgccgaaacgcggccttggcgacgccaccttgcagcttctc
tatgatcacgcgcggcgcgagcgcatccctttgatgcgcgccgcgcaaaacatggtcgag
accgaggagttgaagccgaagcagcgccagaccttgcgcagtcttctgaccgatttcgtc
cgctgggcggctttgatcgatgtgaagccgcaaggcgagctcgccgagatcatccttgag
gaatccggctataccgacatgtggcggaaggaccgcacagccgaggccgcgggccgactc
gaaaacttgaaggagctcgtccgctcgatggaggagtttccggatctcgccggttttctc
gaacatatttcgctggtgatggaggccgaaaacaaggacgccgaggcgcgcttgtccatc
atgaccttgcacgcggcgaaagggcttgaattcgaaaccgtctttctgcccggctgggag
gaggggctgtttccgcatcagcgctcgctcgacgaatcggggcgcgccggcctcgaggag
gaaaggcgcctcgcctatgtcgggctcacgcgggcgaagctcagggcgaaaatttatttc
gcgaccaaccggcgcatccatgggctttggcagacgacgattccctcgcgctttctcgat
gaattgccggccgaccatgtcgacgtcgtcgaagcagcttcgggctccgcctatggcggc
tatgcgcaatcgcgattcgcgaacatggacagctatgcctcatcctattcgacgccggga
tggcagcgcgcccagcagcgccgggccgaggacgccaagcaaggacaggacaaaggaagc
tcgttcaaggagagcagagcgcggcgcgggcctatgcagatcgagggcgagcttgtcgcg
agttcgggcgcatcctcggcctttgcgattggcgcgcgcgtgtttcatgtcaagttcggc
tatggcgaagtagccgccgtcgacggcaacaagctgaccgtggatttcgacaaggccggc
cgcaagatggtgctcgagagtttcgtccaggccggatag
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