Marinomonas pontica: MACH16_09850
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Entry
MACH16_09850 CDS
T09751
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mpon
Marinomonas pontica
Pathway
mpon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MACH16_09850 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpon03019
]
MACH16_09850 (rnr)
03016 Transfer RNA biogenesis [BR:
mpon03016
]
MACH16_09850 (rnr)
Enzymes [BR:
mpon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MACH16_09850 (rnr)
Messenger RNA biogenesis [BR:
mpon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MACH16_09850 (rnr)
Transfer RNA biogenesis [BR:
mpon03016
]
Prokaryotic type
tRNA degradation factors
MACH16_09850 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1_RRP5
OB_RNR_1st
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
BDX02237
UniProt:
A0ABM8FAX9
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All DBs
Position
1069969..1072530
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AA seq
853 aa
AA seq
DB search
MQREASKYDNPVPSREFILEFLATQNKSMGHLDLCKEFSLTGEDEIEALRRRLIAMCRDN
QMTSNQNDEYSPILESDLIEGYVQGNKEGHGFLLRQSDDDIFLSARQMQNVMDGDKVKAR
LSGRSVKGRLDGVVVEVLERKHTQLVGRYYEESRTAFVTPENPRIAQDILITTDSGLTPT
HGQYVLAEIVSYAERGKPAQGLVKKVLGDFMAPGVEIEVAMHRYEIPNEWPAAVEKQIKN
FSTEVAEEDKAHRVDLRETPFVTIDGEDARDFDDAVYCEKTPGGWKLFVAIADVSHYVKK
DTALDEEAIVRGNSVYFPGRVIPMLPEVLSNGLCSLNPDVDRLAMVAEVSLTSKGKMRGF
KFYEGLIRSHARLTYTKVAKMIADEPEEQGVELRERYASIVSHIDDLKGLYQVLKGARDE
RGAMEFDTIETRMVFDENSKIEHIVPVERNDAHKLIEECMLCANVAAAELLIKADLPALF
RVHEGPKDDRLLTLRTYLGLLGLELTGGTKPTPADYAALSESIKDRADARSIQTMMLRSM
SQAVYQADNLGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRYLIRGEGRPAVRQAHRVAGS
PELKERKIYGYNHADMDGLGDSCSLTERRADEATRDVEAWLKCQYVEQHLGEPFDGVVTA
VTSFGLFVELQGLFVDGLVHISGLGQDYFVHDMEHQAIVGERTGRVFRLGDTLKVRVSNV
NLEQRKIDLSLDDNGGRPPRKKVERNDMTELEMQLAQLPPIELGGRSKPKTAAKVSGDKP
KDDKTSKEDNSKDGKGSDGKAKKKRRSPVSKGKRIRQKKSGTVSANGKPTAAAKKPKKPK
KPKKSNAKPKAKD
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgagaagcgtctaagtacgataatcccgtaccaagccgtgaattcattctagag
tttcttgccacccagaataaaagcatgggtcacttagatttatgcaaagagttttcgctg
actggcgaagacgaaatcgaagccctccgtcgccgtctcatcgctatgtgccgagacaat
caaatgaccagcaaccaaaatgacgaatactcgccgattttagagagtgacctgatcgaa
ggttacgtccaaggcaataaagaaggtcatggtttcttgctgcgtcaaagcgatgacgat
attttcctatctgcccgtcaaatgcagaacgtgatggatggcgataaagtcaaagcacgc
ctttctggtcgtagcgttaaaggtcgcttagatggtgtcgtggttgaggtgctagaacgt
aagcacacgcaacttgtaggtcgatactatgaagaaagccgtaccgctttcgtcacacct
gaaaacccacgtatcgctcaagatatcttgatcaccacagattcgggtttaacaccgact
catggtcaatatgtgttggcggaaattgttagctacgctgagcgcggtaaaccagcccaa
ggtttggtgaagaaagtcttgggtgactttatggcaccgggcgttgaaattgaagtggcg
atgcaccgttacgaaattcctaacgagtggccagcggcggtagaaaagcaaatcaaaaac
ttcagcacagaagtagcagaagaagacaaagcgcatcgcgtggatttgcgtgagacaccg
tttgttaccattgatggtgaagacgcgcgcgactttgatgacgcggtatattgtgaaaaa
acaccgggtggttggaaactgtttgttgccattgctgacgtttctcattatgtgaagaaa
gacaccgcattggatgaagaagcgattgtgcgtggtaactctgtgtatttccccggccgt
gttattcctatgttgccagaagtcttgtcgaatggcttgtgttccctaaaccctgacgta
gaccgtttggcgatggttgcagaagtatctttgacgagcaaaggcaagatgcgtggtttc
aaattttatgaaggtttgatccgttcccatgcccgtttgacttacaccaaggtcgcgaaa
atgatcgcagacgagccagaagagcaaggtgttgagctgcgtgagcgttatgcgtccatt
gtgtcgcacattgatgatttgaaaggtttgtatcaggtcctaaaaggcgcgcgtgatgag
cgcggcgcgatggagttcgataccatcgaaacgcgcatggtgtttgacgagaactccaaa
attgaacacattgttcctgtcgagcgtaatgacgctcacaaattgatcgaagaatgtatg
ttgtgcgctaacgtagcggcggcagagttattgatcaaagccgatttgccggccttgttc
cgtgttcacgaagggccaaaagacgaccgtttgttaacgctacgcacttatcttggttta
ttgggattagagctaacgggcggtactaaaccaacgccagcagattacgcggccttgtct
gaaagtattaaagaccgagcggatgcccgtagtattcaaactatgatgctacgctctatg
tctcaagctgtgtatcaagccgataatttgggtcactttggtttgaattatgaagcttat
acgcactttacgtcacctattcgtcgttacccagatttattggttcaccgcgcgattcgt
tatttgattcgtggtgaaggtcgtccggctgtgcgtcaggcgcatcgtgtggcaggcagc
ccagaactgaaagaacgcaagatctacggctacaaccatgctgatatggatggtttaggg
gattcttgctccttgaccgaacgccgtgctgatgaagccacccgtgatgttgaagcttgg
ttgaaatgccaatacgttgaacagcacttgggggaaccctttgatggtgtcgtgacggcg
gtgacgtcgtttggtttgttcgttgagctgcaaggtttgttcgttgatggtttggtgcat
atttcgggtcttgggcaagattactttgttcacgatatggagcatcaagcgattgttggt
gagcgaacgggtcgtgttttccgtcttggtgacacgttgaaagttcgcgtatctaatgtg
aacttagaacagcgcaaaattgatttgagcttggatgataacggcggccgaccaccacgt
aaaaaggtggagcgcaacgatatgaccgaattggaaatgcaattggcgcaattgccaccg
attgaattaggcggtcgatctaagcctaagacggcagcaaaagtaagcggagataaaccc
aaagacgataaaacctctaaagaggataactccaaagacggcaaaggttcagacggtaaa
gcaaagaaaaaacgccgttcgccagtgtctaaaggtaaacgcattaggcagaagaaatcg
ggcacggtgtcggcaaacggtaagccaacggcggcggctaagaagccgaaaaagcctaag
aagccgaaaaaaagcaatgctaagccaaaagcaaaagattga
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