Marinomonas pontica: MACH16_10260
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Entry
MACH16_10260 CDS
T09751
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mpon
Marinomonas pontica
Pathway
mpon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MACH16_10260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpon03019
]
MACH16_10260
03400 DNA repair and recombination proteins [BR:
mpon03400
]
MACH16_10260
Enzymes [BR:
mpon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MACH16_10260
Messenger RNA biogenesis [BR:
mpon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MACH16_10260
DNA repair and recombination proteins [BR:
mpon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MACH16_10260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Cas3-like_C_2
TniB
AAA_22
SWI2_SNF2
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
BDX02278
UniProt:
A0ABM8FB16
LinkDB
All DBs
Position
complement(1107588..1109603)
Genome browser
AA seq
671 aa
AA seq
DB search
MMPLEQTLRSQFGFDAFREGQKQTIEQLLSGHSSLAVFPTGSGKSLCYQFTATQLPNLTL
VISPLIALMHDQLSFLASKGIPAACLDSSQSKEESQAVMSGVQDGSIKILMISVERFKNE
RFRRFIKHIAISMLVVDEAHCISEWGHNFRPDYLKLPSYQQELAIPLVLLLTATATRRVQ
RDMAQKFAIHPEHITQTGFYRHNLDIELISIPSDVNPYEEKLNQLKTTLDDTQGASIVYV
TQQKTAEDVARALQADGYSAIAYHAGLDSDTRSAIQARFMNDKDTTSQTRIIVATIAFGM
GIDKSDIRLVVHFDLPKSIENYSQEIGRAGRDNQPSRCVLLASLEGLSTLENFVYGDTPE
PQDIDRLLKSITEQTTHAPVHYDASNAIWETQPYALSNLTNIRSLPLKTLLVQLELLNVI
TPKYTYYADVRVKWEGDRTAFANRIPTEWQAAYQAILKGIQYKKIWGTPDFDALFNDAGL
SRGEVLNILEFAADHHVLTLESKGLTDVYQVHTEHFHHQTLANQLHQYTEEKQNAEIERI
ATMIRFFQLDRCLNHNLARYFGDQNAPEHCGHCSVCRGKPLTFAQSHTASEAESNDWKNR
LAEYCAEFIQHVQTKSPMTDITPVLITRFLTGLTQPIFTKVKARQLQGFGVYEEKRYLAV
KGAVTQCLSHR
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctctagaacagactctgcgttctcagttcggctttgatgcttttcgagaagga
caaaaacagaccattgaacagctattgtccggccactcttcattggcggttttccctaca
ggatcgggcaaatccctgtgttatcagttcacagcaacgcaattgcctaacttaacgctg
gtgatatcgcctttaattgcgctcatgcacgatcagctgtcatttttagcctcgaaagga
atccctgcggcgtgcttagactccagccaaagcaaagaagaaagtcaggctgtcatgtcc
ggtgtccaagacggatcgattaaaattttaatgatctccgttgaacgcttcaaaaacgaa
cgctttcgacgctttattaaacacattgctatttccatgttagttgtggatgaggcgcat
tgtatttcggaatggggacataacttcagaccggattatttgaagctgccctcttaccaa
caggaactcgccattccgttggtgttattactgaccgccacagccactcgtcgtgttcaa
cgagacatggcgcagaagtttgccattcatcctgaacacatcactcaaactggcttttac
cgtcataatttggacatagagcttatctccattccaagcgatgtaaatccgtacgaagaa
aagctgaaccagttaaaaaccacattagacgatactcaaggggcaagcattgtgtacgtc
acacagcaaaaaacggcggaggatgtggcgcgcgctttacaagccgacggctattctgcc
atagcgtatcatgcggggctggacagcgacacacgaagcgcaattcaagcccgttttatg
aacgacaaagacacaaccagccaaacgcgtattattgtcgcaaccattgcgtttggcatg
ggcattgataaatccgacattcgcttggtcgtgcattttgatctgcccaaatccatagaa
aactacagccaagaaatcggccgagcaggacgcgataatcaacccagtcgctgcgtatta
ttggccagcttagaaggcttaagcacattagaaaactttgtttatggtgatacacctgaa
ccgcaagatatcgacagacttctcaaaagcatcacagaacaaacaactcacgctccggtt
cactatgatgcttccaatgcgatatgggaaacgcagccgtatgctttatccaacctgaca
aacattcgttcgctgccgctaaaaacactgctcgtacaactggagcttttgaacgtgatc
acgccaaaatacacctactacgccgatgttcgtgttaagtgggaaggcgaccgcacagcg
ttcgcaaatcgcattccaactgaatggcaagcggcgtaccaagcgattttaaagggcatt
caatataagaaaatctggggaacgcccgattttgacgcactgtttaacgacgcgggatta
tcacgaggtgaggtgttaaacatcttggaattcgctgccgaccaccatgttttgacccta
gaaagcaaagggttaacggacgtatatcaagtccacacagagcattttcatcatcaaaca
ttagcaaaccaactgcatcaatataccgaagaaaaacaaaacgcagaaattgaacgtatc
gccaccatgatacgtttttttcaattagatcgttgtttgaatcacaatttggcacgctat
tttggtgatcaaaacgcccccgaacactgtgggcattgctcagtctgtcgaggaaaacca
ttgacctttgcccaatctcataccgcttcagaagctgaatcgaacgattggaaaaataga
ctagcggaatattgcgctgaatttattcaacacgttcaaaccaaaagccctatgacagac
attaccccggtgctaatcactcgttttttaacgggacttacccaacctatttttactaag
gtaaaagcgagacagttacagggctttggggtatacgaagaaaaacgttatttggctgta
aaaggcgcggttactcagtgtctgtctcatcgctag
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