Marinomonas pontica: MACH16_17650
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Entry
MACH16_17650 CDS
T09751
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mpon
Marinomonas pontica
Brite
KEGG Orthology (KO) [BR:
mpon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpon03019
]
MACH16_17650
Enzymes [BR:
mpon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MACH16_17650
Messenger RNA biogenesis [BR:
mpon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MACH16_17650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
AAA_19
SRP54
nSTAND3
ResIII
T2SSE
PhoH
AAA_23
ABC_tran
SLFN-g3_helicase
Myosin_head
AAA_25
NACHT
Flavi_DEAD
TsaE
Motif
Other DBs
NCBI-ProteinID:
BDX03017
LinkDB
All DBs
Position
complement(1926658..1930515)
Genome browser
AA seq
1285 aa
AA seq
DB search
MTRDRHLIHQKQGQLRQRQKDGLPFDRMQSELNELIEKSETLHQARLSRLPKITYDESLP
VAARADEIIKAIQENQVVIIAGETGSGKTTQLPKMCLQAGRGIAGLIGHTQPRRIAARSV
AERISDELQVNLGEQVGFQVRFSDESNEETLIKLMTDGILLAEIQQDKRLYKYDTIIIDE
AHERSLNIDFLLGYLKQVLAARPDLKVIVTSATIDIERFSQHFENAPIIEVSGRTYPVEI
RYQPLLSKSDSEELDEDQSMEQGVLDAVELLIAEERQSGYRGAGDILVFLPGEREIRETA
EILRRAELRGTEVLPLYARLSASEQQRIFKSHSGRRIVLSTNVAETSLTVPGIRYVIDPG
LARISRYSVRSKVQQLPIEKISQASANQRAGRCGRVADGICIRLYDENDFNNRPEFTDPE
IFRTNLASVILQMANLKLGAVEKFPFVEMPEKRMINDGYRALTELGALHKDRLTPIGRQL
AKLPIDPKLGRILIAAEQHSVLKEVAIIVSALSIPDPRERPQDKKTQSDQAHAVDKDEDS
DFAVFLNLWERFEEQRQALSQNQLRQYCRKQFLNFMRMREWRDIHRQIMIACKQLGFKEV
QHEERHYEAIHRSLLAGLFTHVANKMEDSKDMLGCRSRKLSIFPGSMLFKKPPQWIMAAE
LVETSKLYARVAARIDPAWIEEYAAPFVKRQYFDPHFERNQGRVMANEQVSLYGLVIVAK
RRMDYGHVNPEDAREIFIRSGLVEGELRTKQAFFRKNKALIESLETQEAKLRTRDILVDD
ETVFAFYHARLPDHVRNLKSLEHFVKTSPEALLMTREDLVQQDVNVDAAAFPDSFGLNGV
ALPIDYKFDPGQASDGATLKVPVGLLRQLSLDDLGWAVPGFIKERCEALLRGLPKALRRR
FVPIPQFVERVYPNLSKDKGDLLEQLSLQIKRETLIDIPLNEWNAEKLDSHLTLNLEVVD
ERGKILGVGKNLAQLQAQFSDLVEESFAKFGTKQHEQEGLSAWPDQDIPERQEIKQAGIK
VTAFPALVSQGDSVSLKMFDDLNTALDTHRKGVVTLLKLTLSKDMRYMQKNLPHLKESML
IFSPLGQKETLLEDLLNAVLEKVFLEGRALPRTRTEFESCVSTHKPRLISVANEMAEQLY
RVLSSYQGVAKKMKGTIPLPWTRVYGDIKVQLEQLIYPGFIGNTPLFWLGQLPRYFKGIE
VRLERFQNHLNKENAAVSELEALWLKYTQQRKAHEDKALYDPELVKYRWMLEEYRISLFA
QSVGTLEPISEKRLAKQWSEVKKLV
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgcgatcgtcatcttatccatcaaaaacaaggtcaactgagacaacgtcaaaaa
gacggtttgccatttgatcgcatgcaatctgaattgaacgaacttatcgaaaaatcggag
acactacaccaagctcgtttgtctcgtctgccaaagatcacctacgacgaaagtttgcct
gttgccgcacgcgcggatgaaatcatcaaagcgatccaagaaaaccaagtcgttattatt
gcgggtgaaacggggtcaggtaaaaccacacagttgccgaaaatgtgtttgcaagccgga
cgaggcatcgcgggtctgatcggccatacgcaaccaagacgtattgcggcgcgcagcgta
gcggaacgtatcagtgatgagttgcaggttaaccttggcgaacaagtgggttttcaggtt
cgttttagtgatgaaagtaacgaagaaacactgatcaagttgatgaccgacggtattttg
ttggctgaaattcaacaagataaacgcctgtataaatacgacaccatcatcatagacgaa
gcccatgagcgcagtttgaacattgacttcctgcttgggtatttaaagcaagtcttggcc
gcacgcccagatctaaaagtgattgtgacctcggcaaccattgatattgaacgtttctcc
cagcattttgaaaacgcgccgatcattgaagtatcgggtcgaacgtatccggttgaaatc
cgttaccagcccttgttaagcaagtccgactcagaggagttagacgaagaccaaagcatg
gagcaaggcgttttagatgcggttgagctgcttattgccgaagaacggcagtcaggatat
cgcggagcgggcgatattttggtgtttttaccgggtgagcgagagattcgtgagacagcg
gagattctacgacgagctgagctacgtggcactgaagtgctgccgctgtatgcgcgtttg
agcgccagcgagcaacaacgcattttcaaatcccattcaggtcgtcggattgtgttatcg
acgaacgtcgcggaaacctcgttaacggtgccgggcattcgctatgtcattgaccctggc
ttagcgcgaattagccgctacagtgtgcgctccaaagttcagcagctaccaatagagaaa
atcagccaagccagtgccaatcagcgagcagggcgatgtggtcgtgtggccgacggtatt
tgcattcgtttgtatgatgaaaacgattttaacaatcgaccagaatttaccgatccggaa
attttccgcaccaacttagcgtcggttattttgcaaatggccaacttgaaactgggcgca
gttgaaaaatttccatttgttgaaatgcccgaaaaacgcatgatcaatgacggttatcgc
gcattaaccgagttgggcgcgttgcacaaagaccgattgactccgattggtcgtcagctc
gccaaattaccaattgacccaaaattagggcggattttgatcgcagctgaacaacacagt
gtgctcaaagaagtggcgattattgtcagtgccttgtctattcctgatcctcgtgagcgc
ccacaagataagaaaacccagtctgatcaagcgcatgccgtcgacaaagacgaagattca
gacttcgccgtgtttttaaacttgtgggaacgttttgaagagcagcgccaagccttgtcg
cagaatcagctgcgtcagtattgtcgaaaacagtttttgaatttcatgcgcatgcgtgag
tggcgagatattcatcgacaaatcatgatcgcttgtaagcagcttggttttaaagaagtt
cagcacgaagaacgtcattacgaagccattcatcgttcattgctggcggggttgtttacg
cacgtggcgaataaaatggaagacagtaaagacatgctgggttgtcgatctcgtaagctg
tctatctttccaggctccatgttatttaaaaaaccaccacaatggatcatggccgcagag
ctggtggaaaccagcaaattgtacgcgcgcgttgccgctcgtattgatcctgcttggatt
gaagaatacgccgcaccctttgttaaacgacaatacttcgatccgcattttgagcggaat
caaggtcgtgtcatggccaatgaacaagtgtctttgtatggcttggtgattgttgcgaaa
cgtcgtatggattatggccacgtcaatccagaggacgcgcgtgagatatttatccgctct
gggctggtggaaggcgagcttagaacgaagcaagcgttttttcgtaagaataaagccctg
attgaatcgctagagacgcaagaagccaagctgcggactcgcgatattttggtggatgac
gagacagtttttgcgttttatcacgctaggctgcctgatcatgtgcgcaatctaaaaagt
ttagagcactttgtaaaaacctcgcctgaagcgctgctcatgactcgtgaggatctggtt
cagcaagacgtaaatgtcgacgcggctgcgtttccagattcttttggtttgaatggcgtt
gctttgccgattgattataagttcgaccccggccaagccagtgatggtgctaccttaaaa
gtgcctgttggtttgttgcgccagttgagcttagacgatttgggatgggcggttcccggt
tttattaaagagcgttgtgaggcgttattgcgtggtctcccaaaagcgttgcgtcgtcgg
tttgtgccaattccgcagtttgttgagcgtgtgtaccccaatttgtcgaaagacaaaggc
gatttgctcgaacagctgagtttgcagattaagcgcgaaaccttaatcgatattccatta
aacgaatggaatgctgaaaaactggattcgcatttgacactcaatttagaagtggtggac
gagcgcggaaaaattttaggtgttgggaagaatctagcgcagctacaggcgcagtttagc
gatctggtggaagagagctttgccaaatttggcacgaagcagcatgagcaagaagggcta
agcgcttggccggatcaagacattccagagcgtcaggagatcaagcaagcgggcatcaaa
gtgaccgcgtttcctgccttggtttcccaaggtgacagtgtgtctcttaaaatgtttgac
gatctgaacaccgcgctggacacgcatcgtaaaggcgtggtgacgttactgaaattgacg
ctcagcaaagacatgcgttacatgcagaaaaacttacctcacctaaaagaatctatgctg
atcttttccccgttggggcagaaagaaaccttgctagaggatttgcttaatgcagtacta
gaaaaagtatttctggaaggtcgtgcgctgccgcgtaccagaacggagtttgaatcgtgc
gttagcactcataaacctcgattaatcagtgttgccaacgaaatggcagagcagctgtat
cgtgtcttatcctcttatcaaggggttgcgaaaaaaatgaaaggcactattccactgcct
tggacgcgagtgtatggggacataaaggtgcaattagagcagcttatttaccccggtttt
attggcaatacgccgcttttttggttggggcaattgccacgatactttaaaggcatcgaa
gtgcggttggagcgttttcaaaatcatttgaacaaagaaaacgccgctgtgtctgaattg
gaagcactttggttgaaatatacccaacagagaaaggcacacgaagacaaagcattgtat
gatccagaattggtgaagtaccgttggatgttagaagagtatcgcatctccttgtttgcg
cagtccgtgggcactttggaacccatttctgaaaagcgcttggcgaaacaatggagcgaa
gtgaaaaaactggtttag
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