Marinomonas pontica: MACH16_20860
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Entry
MACH16_20860 CDS
T09751
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
mpon
Marinomonas pontica
Pathway
mpon03030
DNA replication
mpon03430
Mismatch repair
mpon03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mpon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MACH16_20860 (holA)
03430 Mismatch repair
MACH16_20860 (holA)
03440 Homologous recombination
MACH16_20860 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpon03032
]
MACH16_20860 (holA)
03400 DNA repair and recombination proteins [BR:
mpon03400
]
MACH16_20860 (holA)
Enzymes [BR:
mpon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MACH16_20860 (holA)
DNA replication proteins [BR:
mpon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MACH16_20860 (holA)
DNA repair and recombination proteins [BR:
mpon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MACH16_20860 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
CHS4
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
BDX03338
LinkDB
All DBs
Position
2275671..2276699
Genome browser
AA seq
342 aa
AA seq
DB search
MKVRADQLIQQLKKNLAPIYIISGDDVLLCQEAADSIRKAAQHHQIDERLRFVADAQFDW
QDVINENQSLSLFSSRRLFDIQIDKMGEKHSKALAQLGQSLSEDNTILLTLPKIDARTQK
AKWFTQLESQGVFVQIWPIEANRLPAWVQQRAQSLDLSLTRDAASVICERGEGNLLALSQ
ELEKLALLHGQGAQIDAEKVVESVADSSRYSIYDLSDRLLMGKAKDAMHCLNQLLGEGVE
PSIILWLFNREVQTLANLLQSMQSSSFRQACQSEKIWDKRVPFYESAMSRHNKVTLPYMQ
NYLALIDKSIKGLEGPDSATGFRNLVMMFCGYKPTCTELDIP
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtccgcgcggatcaactaatacagcagctgaagaaaaatttagcccctatttat
attatttcgggtgacgatgtgttgttgtgccaagaagccgcagacagcattcgaaaagcc
gcacaacatcaccaaatcgatgaacgacttcgttttgttgccgatgcgcagtttgactgg
caagacgttattaatgaaaaccaaagtctgtctttattttcaagccgacgcttattcgat
atacaaatagataaaatgggcgaaaaacacagcaaagctttggctcaattaggtcaatcc
cttagcgaagacaataccattttactaacgttgcctaaaatcgatgctcgaacgcaaaaa
gcaaaatggttcacacaacttgagtctcaaggtgtatttgtacaaatttggccaatcgaa
gccaaccgattgcctgcatgggtacagcaaagagcgcaatcccttgatctatcactgact
cgggatgccgccagtgtgatctgtgaacgcggcgaaggtaaccttctggcgctttctcag
gagttagaaaagctcgccttacttcatggccaaggcgcccaaatagatgccgaaaaagtc
gttgagtcagttgcagacagcagtcgctactctatctacgatcttagtgacaggctgtta
atgggcaaagccaaagacgccatgcattgcttaaatcaattgcttggcgaaggtgtcgag
cccagcattatcttgtggctgtttaatcgcgaagtgcaaacattggccaacctccttcaa
agcatgcaatcctcgagcttcagacaagcttgccaaagtgaaaaaatctgggacaaacgc
gtgcctttttatgaaagcgccatgtcacgccacaataaagtcaccctaccttacatgcag
aattacctagcattgatagacaaaagcatcaaaggtttagagggcccagacagtgcaaca
ggctttcggaatttggtgatgatgttctgcggatacaaaccgacttgcacagaactcgac
atcccataa
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