Marinomonas pontica: MACH16_25660
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Entry
MACH16_25660 CDS
T09751
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mpon
Marinomonas pontica
Pathway
mpon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MACH16_25660 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpon03019
]
MACH16_25660 (rhlE)
Enzymes [BR:
mpon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MACH16_25660 (rhlE)
Messenger RNA biogenesis [BR:
mpon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MACH16_25660 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Flavi_DEAD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BDX03818
UniProt:
A0ABM8FFG7
LinkDB
All DBs
Position
2789722..2791116
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AA seq
464 aa
AA seq
DB search
MSFNKLGLSAPILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPLL
EILSKGEHAQNNQVRALVLTPTRELAAQVAESVKNYGQHLGLKSTVVFGGVKINPQMMAL
RRGADILIATPGRMMDLYNQKAVRFDKLEVLVLDEADRMLDMGFIHDIKKILAILPKKRQ
NLLFSATFSPEIRQLAKGLVNNPVEISVTPRNATAVSVEQWLHPVDKKRKTELLIKLIAE
GRWDQALVFSRTKHGANKITKQLEDAGIRASAIHGNKSQGARTRALSDFKEGRIRILVAT
DIAARGLDIEQLPHVVNFDLPDVAEDYVHRIGRTGRAGATGKAISLVAADELDQLRAIER
LTQKLIERRYDDDFFPSHMLPDTTLDTRPIKPNKPKKPKASRDQHAGARQGNGVKQGGNP
AKQGNAPKSGNRRPNTSKAEVTQGQGLRSKPLAPARRNRKPAQD
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcaacaaacttgggctttctgcccccatcctaaaagccattgaagaccaaggc
tacactgagccatccgctatccaagctcaggcaataccagccattcttgaaggccaagat
gtgatggccgcggcccaaaccgggacaggtaaaaccgcggggtttaccttacctttgctt
gaaattctaagcaaaggcgaacacgcgcaaaacaaccaagtacgcgcattagtattaaca
ccaacacgtgaactggccgctcaagttgccgagagcgttaagaattatggccagcatttg
ggcctgaaatcgaccgtggtatttggtggcgtaaaaatcaacccacaaatgatggcattg
cgtcgtggcgccgatattctgatcgctacaccaggtcgtatgatggatttgtacaaccaa
aaagccgtacgattcgacaaactggaagtgctcgtattagatgaagccgatcgcatgttg
gacatgggctttatccacgacattaagaaaatcttagcaatccttccaaagaagcgtcag
aacttgctgttttctgcgacgttctctcccgagattcgtcaacttgcaaaaggcttggtg
aataaccctgtagaaatatcggtgaccccacgcaatgcgacggcagtgtctgttgagcaa
tggctacaccctgtcgataaaaagcgcaaaaccgaactgcttattaaattgatcgcggaa
ggtcgttgggatcaagcgttggtattttctcgtaccaaacacggcgcaaacaaaatcacg
aagcaactagaagacgctggcattcgcgccagtgcgattcatggcaacaaaagccaaggt
gcacggactcgtgccttgtcagactttaaagaaggtcgtattcgcattttggtcgcgact
gatattgccgcgcgaggactggatatcgaacagcttcctcatgtggtcaactttgatcta
ccagatgtcgccgaagactatgttcaccgcattggtcgaactggccgcgctggcgcaaca
ggcaaagccatttctttggtggctgcggatgagttagaccaattgcgagcgattgaacgt
ttgacgcaaaagctgatcgaacgtcgctatgatgatgattttttcccatctcatatgttg
cctgacaccacattggacacgcgtccaatcaagccaaacaaaccgaaaaagccaaaagca
tctcgcgaccagcacgcaggcgcaagacaaggtaatggcgtgaaacaaggcggaaaccct
gcgaaacaaggcaatgcgcctaaatcaggaaatcgtcgtccaaacacatcaaaagcagag
gtaacacaagggcaaggtttgcgtagcaaacctctggcgccagcgcgacgcaaccgcaaa
ccggctcaagactga
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