Micrococcus porci: KW076_02330
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Entry
KW076_02330 CDS
T09146
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mpor
Micrococcus porci
Pathway
mpor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KW076_02330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpor03019
]
KW076_02330
Messenger RNA biogenesis [BR:
mpor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KW076_02330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
OB_DNA_ligase
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
UBH25050
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Position
complement(497707..499440)
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AA seq
577 aa
AA seq
DB search
MTRSSRNSSSRRRGGGQSRRPRSSGAPGQLAKGGLRITPLGGLGEIGRNMTVFEHQGKLL
IVDCGVLFPEDHQPGIDVILPDFTSIRDRLQDVVGVVLTHGHEDHIGGVPYLLKERPDIP
LIGSELTLAFIEAKLKEHKIVPKTHMVVAEDKRHMGPFELEFVAVNHSIPDALAVAIRTE
AGLILHTGDFKMDQFPLDRRITDLRHFARLGEEGVDVFLTDSTNAEVPGFTISERELTPA
IDHVFRTAPKRIIVSSFASHVHRIQQVLDAAHASGRKVAFVGRSMVRNMGIAGDLGYLKI
PKGLVVDFKKLQDMPDEKIALISTGSQGEPMAALGRMANQTHQIKLNKGDTVLLASSVVP
GNETSITGIINKFTDMGVNVVHKGNAKVHVSGHASAGELVYCYNIVQPRNVMPVHGEAAH
LHANAELAKKTGLPEDRVFITKDGDVLDLVDGRVSVAGKVEAGLVYVDGDTIGKVTEGTL
EERRTMQEAGVVTVVAIVDPDTNQLAEPLEFMTKGFIQDASVFKGAAEKVKSALSRSNVQ
DIDDIEKLERVIGDAVTRHLERAYRRAPLVTVVVVDA
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
ttgactcgttcctcccgcaactcctcctcccgtcgccgcggcggcggccagtcccgccgc
ccccggtcctccggcgcccccggccagctcgcgaagggcggtctgcgcatcaccccgctc
ggcggcctcggcgagatcggccgcaacatgaccgtcttcgagcaccagggcaagctcctg
atcgtggactgcggcgtgctcttcccggaggaccaccagcccggcatcgacgtgatcctg
ccggacttcacctccatccgtgaccgcctgcaggacgtcgtcggcgtcgtgctgacccac
ggccacgaggaccacatcggcggcgtcccgtacctcctcaaggagcgcccggacatcccc
ctgatcggctcggagctgacgctggccttcatcgaggccaagctcaaggagcacaagatc
gtccccaagacccacatggtggtcgcagaggacaagcgccacatgggcccgttcgagctc
gagttcgtggccgtgaaccactccatcccggacgcgctcgccgtggcgatccgcacggag
gccggcctgatcctgcacaccggcgacttcaagatggaccagttcccgctggaccgccgc
atcaccgacctgcgccacttcgcccgcctgggcgaggagggtgtggacgtgttcctcacg
gactccaccaacgcggaggtcccgggcttcaccatctccgagcgcgagctgacccccgcc
atcgaccacgtgttccgcacggcgccgaagcggatcatcgtctcctcgttcgcctcgcac
gtgcaccgcatccagcaggtgctcgacgccgcccacgcctccggccgcaaggtcgccttc
gtggggcgctcgatggtgcgcaacatgggcatcgccggcgacctgggctacctcaagatc
cccaagggcctcgtggtggacttcaagaagctgcaggacatgccggacgagaagatcgcc
ctgatctccaccggctcccagggcgagccgatggccgcgctgggccgcatggccaaccag
acgcaccagatcaagctgaacaagggggacaccgtcctcctggcctcctccgtggtgccg
ggcaacgagacctccatcaccggcatcatcaacaagttcacggacatgggcgtgaacgtg
gtgcacaagggcaacgcgaaggtgcacgtctccggccacgcctccgccggcgagctggtg
tactgctacaacatcgtgcagccccgcaacgtgatgcccgtgcacggcgaggccgcgcac
ctgcacgccaacgcggagctggccaagaagaccggcctcccggaggaccgcgtgttcatc
accaaggacggcgacgtcctggacctggtggacggcagggtctccgtggcgggcaaggtc
gaggccggcctcgtctacgtggacggcgacacgatcggcaaggtcaccgagggcaccctc
gaggagcgccgcaccatgcaggaggccggcgtcgtcacggtcgtggcgatcgtcgacccg
gacaccaaccagctggccgagccgctcgagttcatgaccaagggcttcatccaggacgcg
tccgtgttcaagggcgccgcggagaaggtgaagtccgccctgtcccgctcgaacgtccag
gacatcgacgacatcgagaagctcgagcgcgtgatcggcgacgccgtcacccgtcacctg
gagcgcgcctaccgccgcgcgccgctggtgaccgtggtggtcgtggacgcctga
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