Methanohalophilus portucalensis: BKM01_09435
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Entry
BKM01_09435 CDS
T09768
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
mpot
Methanohalophilus portucalensis
Pathway
mpot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKM01_09435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpot03019
]
BKM01_09435
Messenger RNA biogenesis [BR:
mpot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
BKM01_09435
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
BKM01_09435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
ATU08972
UniProt:
A0A2D3C667
LinkDB
All DBs
Position
complement(1842936..1843820)
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AA seq
294 aa
AA seq
DB search
MSDKPERFIDDEGLRLDGRRVDEIRPMKVEMGVLSRADGSCYLEWGNNKVLAAVYGPREL
HPRRMQKPNEVLVRYKYNMASFSVEDRIRPGPSRRSTEISKVSGEAFEPVVMTQYYPGAV
IDVFAEVLQADAGTRTAAINAATLALADAGIPMKGLVSACAVGKVDGQLVLDLNKPEDNY
GQADLPVAMTQDGEITLLQMDGHLTPEELEEGLEMVKKGCQQILEIQREALVSRYGNEDE
EGEEAEEETPEEVPESEEEEEERDDSFDNEESEAENADENDVTEEDEGEEDERQ
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataaaccggaacgttttattgatgatgagggtctccgccttgatggaaggcgt
gttgatgagatccgacccatgaaagtagagatgggtgtgctttcaagagctgatggctca
tgttaccttgaatggggaaataataaggtgcttgcagcagtttatggcccccgtgaactg
cacccgagaaggatgcagaaacccaatgaagtacttgtgcgctacaagtataatatggcc
tctttttctgtggaagacaggataagaccgggcccaagcagaagaagtactgagatatcc
aaagtcagtggagaagcttttgaacctgttgtgatgacacaatattatcccggtgctgta
atagatgtattcgcagaagtattacaggccgatgcagggaccaggaccgctgctatcaat
gcagcaacacttgctcttgcagatgctggcatacccatgaaagggcttgtttcagcctgt
gcagtagggaaagttgatgggcagcttgttcttgatctcaacaaaccagaagataattat
ggtcaggctgatcttcctgtcgcaatgacccaggatggggaaataactcttctccagatg
gatggccaccttactcctgaagaacttgaagaaggcttggagatggttaaaaaaggctgc
cagcaaattcttgaaattcagcgtgaagcccttgtttccagatatgggaatgaggatgaa
gaaggcgaagaagctgaagaggaaactccagaagaagtccctgaatcagaagaagaggaa
gaagaaagggatgactcattcgacaatgaagaatctgaagcagaaaacgcggatgaaaat
gatgtaaccgaagaggatgagggtgaagaagatgagcggcagtga
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