KEGG   Micromonas pusilla: MICPUCDRAFT_29880
Entry
MICPUCDRAFT_29880 CDS       T02696                                 
Name
(RefSeq) uncharacterized protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
mpp  Micromonas pusilla
Pathway
mpp03013  Nucleocytoplasmic transport
mpp03015  mRNA surveillance pathway
mpp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mpp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MICPUCDRAFT_29880
  09122 Translation
   03013 Nucleocytoplasmic transport
    MICPUCDRAFT_29880
   03015 mRNA surveillance pathway
    MICPUCDRAFT_29880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mpp03019]
    MICPUCDRAFT_29880
   03041 Spliceosome [BR:mpp03041]
    MICPUCDRAFT_29880
Enzymes [BR:mpp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     MICPUCDRAFT_29880
Messenger RNA biogenesis [BR:mpp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     MICPUCDRAFT_29880
Spliceosome [BR:mpp03041]
 Complex C
  Other components
   EJC/TREX
    MICPUCDRAFT_29880
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    MICPUCDRAFT_29880
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 CMS1
Other DBs
NCBI-GeneID: 9689241
NCBI-ProteinID: XP_003063800
JGI: 29880
UniProt: C1N6V9
LinkDB
Position
Unknown
AA seq 425 aa
MAADEPVEQEEELLDYEEEEEATEVQGAKAGEAVKKGYVGIHSTGFKDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLAVLQQLEPVPGEIGALILCH
TRELAYQIMHEFERFSVYLPNVNVSVVFGGVNIKQQKEELEAKPPSVVVATPGRLKALAK
DGSLSLKQCGHFILDECDKMLEQLDMRSDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKK
FMNDPMEIYVDDETKLTLHGLVQHYIKLQEGEKNRKLNDLLDALMFNQVVIFVKSVQRCT
YLDKLLTECNFPSIAIHRGMSQEERLARYKSFKEGHKRILVATDLVARGIDIERVNIVIN
YDMPDGADTYLHRVGRAGRFGTKGLAITFIASDEDSGVLNQVHERFEVEIKELPEQIDTS
TYMPA
NT seq 1278 nt   +upstreamnt  +downstreamnt
atggccgccgacgaacccgtcgagcaagaggaggagctcctcgactacgaggaggaggaa
gaagcgaccgaggttcagggcgccaaggcgggcgaggcggtcaagaagggctacgtcggc
attcacagcaccggtttcaaggacttcctcctgaagccggagctcctgcgcgcgatcgtg
gactgcggcttcgagcacccgtccgaagtccaacacgaatgcatcccgcaggcgatcctc
ggcatggacgtcatctgccaggccaagtctggcatgggcaagacggcggtgttcgtcctc
gcggtgctgcagcagctcgagcccgtcccgggcgagatcggcgcgctcatcctgtgccac
accagagagctcgcgtatcagatcatgcacgagttcgagcggttctccgtgtacctcccg
aacgtgaacgtctccgtcgtcttcggcggcgtgaacatcaagcagcagaaggaggagctc
gaggcgaagccgccgagcgtggtggtggcgacgcccgggcggctcaaggcgctcgcgaag
gacggctcgctgtcgctgaagcagtgcgggcacttcatcctggacgagtgcgataagatg
ctcgagcagctcgacatgcgctcggacgtgcaggagatcttcaagatgaccccgcacgat
aagcaggtgatgatgttcagcgcgacgctcagcaaggagattcgaccggtgtgcaaaaag
tttatgaacgatccgatggagatctacgtggacgacgagacgaagctgacgctgcacggt
ctcgtgcagcactacatcaagctccaggagggcgagaagaaccgtaagctgaacgacctt
ctcgacgcgctgatgttcaaccaggttgtgatcttcgtcaagtccgtgcagcggtgcacg
tacctcgacaagctcctcaccgagtgcaactttccgtccatcgccatccaccgcgggatg
tcccaagaggagcgcctcgcgcggtataagtcgttcaaggaggggcacaaacggatcctc
gtcgcgacggacctcgtcgcgcgcgggatcgacatcgagcgggtgaacatcgtcatcaac
tacgacatgccggatggcgcggacacgtacttgcaccgcgtaggtcgcgccggacggttc
ggcaccaaggggctcgcgatcacgttcatcgcctcggacgaggacagcggggttttgaac
caagtgcacgagcgcttcgaggtggagatcaaggagctcccggagcagatcgacacgtcc
acgtacatgcctgcgtga

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