Micromonas pusilla: MICPUCDRAFT_32119
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Entry
MICPUCDRAFT_32119 CDS
T02696
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mpp
Micromonas pusilla
Pathway
mpp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICPUCDRAFT_32119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpp03019
]
MICPUCDRAFT_32119
03041 Spliceosome [BR:
mpp03041
]
MICPUCDRAFT_32119
03009 Ribosome biogenesis [BR:
mpp03009
]
MICPUCDRAFT_32119
03016 Transfer RNA biogenesis [BR:
mpp03016
]
MICPUCDRAFT_32119
Enzymes [BR:
mpp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MICPUCDRAFT_32119
Messenger RNA biogenesis [BR:
mpp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
MICPUCDRAFT_32119
Spliceosome [BR:
mpp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
MICPUCDRAFT_32119
Complex C
U4/U6.U5 tri-SnRNP related factors
MICPUCDRAFT_32119
Ribosome biogenesis [BR:
mpp03009
]
Eukaryotic type
Pre-60S particles
Helicases
MICPUCDRAFT_32119
Transfer RNA biogenesis [BR:
mpp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
MICPUCDRAFT_32119
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
Helicase_C
DEXQc_Suv3
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
9682590
NCBI-ProteinID:
XP_003056687
JGI:
32119
UniProt:
C1MNQ5
LinkDB
All DBs
Position
Unknown
AA seq
979 aa
AA seq
DB search
MRPPPPRTSCVHQVAIPECWDGDRDALNNPTYDGARAKAYPFVLDAFQETSIAVLERNES
VMVAAHTSAGKTVVAEYAIAMAFRDKQRVIYTSPIKALSNQKFRELAEEFGGDAGAEVGL
MTGDVCINKNATCIVMTTEVLRGMLYRGSEIVREVKWIIFDEVHYMRDKERGVVWEESII
HAPEGSKMVFLSATLPNSFQFAQWITRLHDHPCHVVYTDHRPTPLQHYAFPKGGSGLHLI
VDDRGNFRDENYRALSNAIDDVEAKRKAGGKGGGRGGGGRGGGRGGGAGAGGDDAGGEDI
SKVMTMIKKKDMYPVICFSFSRRECEEHPKALKNVDFTNDEEKAHIRTIFNHALTQCMAE
EDRDLDAVTKILPLLEKGVGIHHSGLLPIVKELVEILFGESLVKCLFATETFAMGLNMPA
KTVVFTSTEKFDGTEMRLLAPGEYTQMSGRAGRRGKDDRGTCIIMVDKKLEKEQLRGVCL
GTPQPLNSEFKLTYYSILNLLKRAEGVVNAEYVIERSFHQFQHAEAVPRHKARLVEIEEE
MTAMTHEHEAGVKAYHDLRREISACEAEMRARIVSPENAMRFLKPGRMIRVKHDGLDFGW
GVVVHVAADAAGNDHVVDTLLQCAPGASEGKLAPASRGGPPSRAIDPDATCEVLPVSLAE
CVHELSAIRVTLPDDLRLRKNRESVGLALNELHQRYADDAFPRIDPIADMGIDDDAFAAT
AARCEALEKKLAKTTTFKALQKEKKGDEGGEETKRVALYEKRAKLEEEAATLRSKVRSLS
AVGEFRKELKSRAKVLKRLGHVDDALVVKLKGRAACEIDTADELLVTELMFNGCFTRLDA
SQLVALCSMFMPVEKVKHYTTPEALTPAIEELTTAAREIATLQKECKLDIDVDEFVDSFK
PVLCEVVFDWSKGARFDDVMKKTDLFEGTVIRALRRLDELMMELHRAACAVGDEALAKKF
EEGAKSLRHGVVFATSLYL
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgcgaccgccgccgccgcggacgtcgtgcgtgcaccaggtcgcgatcccggagtgctgg
gacggcgaccgcgacgctctgaacaacccgacgtacgacggcgcgcgcgccaaggcgtac
ccgttcgtcctcgacgcgttccaggaaacctccatcgcggtcctcgagagaaacgagagc
gtgatggtcgccgcgcacacgtccgcggggaagaccgtcgtcgcggaatacgccatcgcg
atggcgttccgggacaagcagagggttatatacacctccccgatcaaggcgctgtcgaac
cagaagttccgagagctcgcggaggagtttggcggcgacgccggcgcggaggtgggtctc
atgacgggcgacgtgtgcatcaacaaaaacgcgacgtgcatcgtgatgacgacggaagtc
ctgcgcgggatgctgtaccgcgggagcgagatcgtgcgagaggtcaagtggatcatcttc
gacgaggtgcactacatgcgggataaagagcgaggcgtcgtgtgggaggagagcatcatt
cacgcgccggagggaagcaagatggtctttctctccgccacgctgcccaactcgtttcag
ttcgcgcagtggatcactcgactgcacgaccacccgtgccacgtcgtgtacacggaccac
aggcccacgccgctgcagcactacgcgttcccgaagggcgggtccggcttgcatctgatc
gtggacgaccgggggaacttccgggatgaaaactaccgagcgttgtcgaacgcgatcgac
gacgtcgaggcgaagcgcaaggcgggcggcaagggcggcgggagaggcggcggcgggcgc
ggcggcgggcgcggcggaggcgccggcgccgggggcgacgacgcgggcggtgaggacatc
tccaaggtcatgacgatgataaaaaaaaaagacatgtatccggtgatttgcttttccttc
tcgaggcgagagtgcgaggagcacccgaaagcgctgaagaacgtcgacttcacgaacgac
gaggagaaggcgcacatacggacgatattcaaccacgcgctgacgcagtgcatggcggag
gaggaccgcgatttagacgcggtgacgaagattttgcctctgctcgagaagggcgtcggc
atccatcacagcgggctgctgcccatcgtgaaggagctcgtcgagattctcttcggcgag
tcgctcgtgaagtgtctcttcgccacggagacgttcgcgatggggctgaacatgcccgcg
aagacggtcgtgttcacgtccacggagaagttcgacggcacggagatgcgtctgctcgcg
cccggagagtacacgcagatgagcggccgcgcggggaggagaggcaaggacgaccgcggg
acgtgcatcatcatggtggacaagaagctcgagaaggagcagctccgcggggtgtgtctc
gggacgccgcagccgctgaattcggagttcaagctgacgtattactccatcttgaacctc
ctgaagcgcgcggaaggggtcgtgaacgcggagtacgtcatcgagcgttcgtttcatcaa
tttcaacacgcggaggcggtgccgagacataaagcgcgcttagtcgagatcgaagaggag
atgacagcgatgacgcacgagcatgaggccggggtgaaggcgtaccacgaccttcgaaga
gagatctccgcgtgcgaagccgagatgcgcgcgcggatcgtatccccggagaacgcgatg
cggtttttgaaaccggggaggatgattcgcgtgaagcacgacgggctcgacttcggctgg
ggcgtcgtcgttcacgtcgccgcggacgccgcggggaacgaccacgtcgtggacacgctg
ctgcagtgcgctccgggcgcgagcgagggaaagctcgcgccggcgagccgcggcgggccc
ccgagtcgcgcgatcgacccggacgcgacgtgcgaggtgcttccggtgtctctggctgag
tgcgtgcacgagctcagcgcgattcgcgtcacgctgccggacgacctgaggttacgaaaa
aaccgcgagagcgtcgggctcgcgctgaacgagctgcatcagcggtacgccgacgacgcg
ttccccaggatagacccgatcgcggacatggggatcgacgacgacgcgttcgcggcgacg
gcggcgcggtgcgaggcgctcgagaagaagctcgcgaaaacgacgacgttcaaggcgtta
caaaaagagaagaagggtgacgagggcggcgaggagacgaagcgcgtcgcgctgtacgag
aagcgtgcgaagctcgaagaggaagcggcgacgttgcgctcgaaggttaggtcgctgagc
gccgtcggcgagttccgcaaggagctcaagtcgcgcgccaaggttttgaaacggctcggg
cacgtcgacgacgcgctcgtcgtgaagctcaaaggccgcgccgcgtgcgagatcgacacc
gcggatgagctcctcgtcacggagctcatgttcaacggctgcttcacgaggctggacgcg
tcccagctcgtcgcgttgtgctcgatgttcatgcccgtggagaaggtgaagcactacacg
acgccggaggcgctgacgcccgcgatcgaggagctgacgaccgcggcgagggagatcgcg
acgctgcagaaggagtgcaagctcgacatcgacgtggacgagttcgtggactcgttcaag
cccgtgctgtgcgaggtggtgttcgactggagcaagggcgcgcggttcgacgacgtcatg
aaaaagacggatttattcgagggcacggtgatccgagcgctgcgaagattggacgagctc
atgatggagctgcatcgcgcggcgtgcgcggtcggggacgaggcgctcgcgaagaagttc
gaggaaggcgcgaagagtttacggcacggcgtcgtgttcgccacgagcctgtacctgtga
DBGET
integrated database retrieval system
