Micromonas pusilla: MICPUCDRAFT_47716
Help
Entry
MICPUCDRAFT_47716 CDS
T02696
Name
(RefSeq) uncharacterized protein
KO
K12879
THO complex subunit 2
Organism
mpp
Micromonas pusilla
Pathway
mpp03013
Nucleocytoplasmic transport
mpp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mpp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MICPUCDRAFT_47716
09122 Translation
03013 Nucleocytoplasmic transport
MICPUCDRAFT_47716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpp03019
]
MICPUCDRAFT_47716
03041 Spliceosome [BR:
mpp03041
]
MICPUCDRAFT_47716
Messenger RNA biogenesis [BR:
mpp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
MICPUCDRAFT_47716
Spliceosome [BR:
mpp03041
]
Complex C
Other components
EJC/TREX
MICPUCDRAFT_47716
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
MICPUCDRAFT_47716
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
DnaJ_C
Motif
Other DBs
NCBI-GeneID:
9685538
NCBI-ProteinID:
XP_003059811
JGI:
47716
UniProt:
C1MVU4
LinkDB
All DBs
Position
Unknown
AA seq
1687 aa
AA seq
DB search
MDGALPSAPLERRAGRDARAREVGIMTNPGIERRLVTGDVVAMLKSGKDPKIAPADQRRY
VLELAWAFLGDELDASHLDRAVRVALPGDASDGSDGPSLAASTTADVLWLVSCEVEMQPE
RRAKVVDLAKALCDGDDALCAPGLLIERCEGEFLEECGLIPSAVGWKKKEVRINTRLVYT
QNKFNLLREESEGYSKLVVALAAFGERGSGDDDAVAGAIRSTQARYFDLDPNRVLDLVFE
AYERWPANDGFAELLRLFRTENFAQVLGFKFQCHAKAAAAALAEKEDGEAGEDTAGVLKD
RRSQRERGRMGTSVLSDGAARAEGGDDDAAREEKDGTNKETFNANKDKDKAPATSESLKT
TPTTVTVTATPKSLYVLAATLVRKNLVEMDDLYAHLHPADDVAAEKHAAEVSRRLAAAKK
IGVVNLRGGADDGAARGPDPYVVAATPVPDETNQKLGLLRGFLAIGDLRAAASLLERLAE
LGLDPAEDAEVRDALCVAARDALKEAHARAAPAGCAAALEGRGDVDGRKPPSAEGFPLPD
AAFEIIALLGPHVHHDVILFTRIARCLKQHIAWARKRGDDASARRGEDAVGACVLPALGL
TASNPGAVNEVWATLASLPVTTRFRLYSEWKAVFSSDAETGAEVKPAFAAAKAVAESDTL
KVMRRLSKDNVKEFGRKLGKVAHANPLAVMNAIVRQIEAYTNMISPVCDAFKYLTAMGYD
VLTFVVIEKLAEGREKLKDDGQNVSLWLSALATFCGHLAKKYGNVELSALLQYLVNTLKD
NQSLDLLVLKELITRMTGNEPLEDMSDAQVAAMSGGETLKSEAINFNSAMAPKVRAKGVA
RLRDALQRGAKGGDSLTVPLLILIAQCRQNIVFNTPSKHLKLISQLYDGCQETFFHYCDF
LAQAYDDEKYAKMIPSLKELVHDYGIEPGAAFHIFRPVLRHLKPRPAPSKDKPVDVCNAA
IALDIGGAKTTWGELLADVRGMLPEVTWQAISPELYLCFWANTAYDLHVPRARYDAEIEK
CRASLTVLEGLPTRDVSSSDLAKRRKEKDRLQTLVDTLQKELDAQERAVSKKTKSLMIEK
DAFLVDLPDIKSTVSVILQRCVLPRCVFSPADAIYCARFAERLHALDTPYFSTVQYYNTA
LKDLTQLIFSRTEYEAGRLGKFLNETLTQLARWKADETAYERECASKNGFKTTFKEPSGG
TNAKRVTYEEFVKLVYKWHLRLAKCFVHCLEGSDYMEIRNALMVLTKIVKVFPAITRIGG
HTLRRVEKIKESDERGDLKTIAARYLAMLQMERKAWRPDNAFNPYLPPDPKQQEKDAAAT
ATSKGGGGDEEGAIKPEGGGGEKGSGAAAGAGAGAAAKKRGRADAGKLSAEAPEFTPTKD
AAADADGGGGGSKKRARGARDADGGKDDGKGGAKGKDDQKSAKDAGGGGGGGGGRGGGGG
RGGGGRESEKEKEERLRAEAKSAKETRERDQKRRRDDEADGKGANDSNKRARKGDGGTRG
RPDWDSGREPGGGGGGRGNRGGGGGAHRDDDRRGGGGGRDRGGPPGKTSETTDVTVTVPP
GVCDGASLRLKEMGGGGTPPGDLYVKIAADDMSEGAVIRRDGANLISDLVVRFEKRGEDT
SARVRTVEGEHGTLKVRADVEVGQALRIKGRGAPVKPGSEERGDHLFVVKKIIHLDRGSG
DGDDDAA
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atggacggcgcgctgccgtctgcgccactggagagacgcgcgggacgggacgcgcgcgca
cgggaggtcggcatcatgacgaaccccggcatcgagcggcggctcgtgaccggggacgtc
gtcgccatgctcaagagcgggaaggaccccaagatcgcgcccgcggaccagcgtcggtac
gtcctcgagctcgcgtgggcgttcctcggcgacgagctcgacgcgtcgcacctggaccgc
gcggtgcgcgtcgcgctcccgggcgacgcgtccgacggctcggacgggccgtcgctcgcg
gcgtccacgaccgcggacgtcctctggctcgtgtcgtgcgaggtggagatgcagccggag
cgtagggcaaaggtcgtggacctcgcgaaggcgctgtgcgatggcgacgacgcgctgtgc
gcgccggggctgctcatcgagcgatgcgagggcgagtttctggaggagtgcgggctcatc
ccgtccgcggtgggatggaagaagaaagaagttcggatcaacacgcggctcgtgtacacg
cagaacaagttcaacctgcttcgcgaagagagcgaggggtactcgaagctcgtcgtcgcg
ctcgcggcgttcggcgagcgcgggtccggggacgacgacgccgtcgccggcgcgattcga
tcgacgcaggcgcgctacttcgacttggacccgaaccgcgtgttggacctggtgttcgaa
gcgtacgagcgctggcccgcgaacgacgggttcgcggagctgctgcggctgttccgaacg
gagaacttcgcgcaggtgctcgggtttaagtttcagtgccacgccaaggcggcggcggcg
gcgctcgcggagaaggaggacggagaagccggcgaggacacggccggagtccttaaggat
cggcgttcacaacgcgaacgcggtcgtatggggaccagtgtgctctcggacggcgccgcg
cgcgcggagggcggcgacgacgacgccgcccgcgaagagaaggacggcacgaacaaagag
acattcaacgcgaacaaggacaaggacaaggcgcccgcgacgtccgagtcgctgaaaaca
acgccgacgacggtaacagtgacggccacgccgaagtcgttatacgtcctcgcggcgacg
ctcgtgcgcaagaacctggtcgagatggacgacctctacgcacacttgcaccccgcggac
gacgtcgccgcggagaaacacgcggcggaggtgagccggcgactcgccgccgcgaagaag
attggcgtcgtgaaccttcgcggcggcgcggacgacggcgcggcgcgcggtccggacccg
tacgtcgtcgcggcgacgccggtcccggacgagacgaaccagaagctcggtctgttgcgc
ggcttcctcgcgatcggcgatttacgcgccgccgcgtcgctcctcgagcgcctcgccgag
ctcgggttagaccccgcggaggacgcggaggtgcgcgacgcgctgtgcgtcgccgcgagg
gacgcgctgaaggaggcgcacgcgcgcgcggctcccgcgggatgcgccgccgcgctcgag
ggccgcggcgacgtcgacggaagaaagccgccgtccgcggagggcttcccgcttccggac
gccgcgttcgagattatcgcgctcctcggcccgcacgtccaccacgacgtgattctgttc
acgagaatcgcgcggtgcctgaagcagcacatcgcgtgggcgcggaagcgcggcgacgac
gcgtcggcgcggagaggcgaagacgcggtgggcgcgtgcgtcctccccgcgctcgggctg
acggcttcgaaccccggcgcggtgaacgaggtgtgggcgacgctggcgtcgctcccggtc
acgacgcggtttcggttgtactcggagtggaaggcggtgttttcttcggacgcggagacg
ggcgcggaggtgaagcccgcgttcgcggcggccaaggcggtggcggagagcgataccctc
aaggtgatgcgtcgtctgtccaaagacaacgtgaaggaattcggccggaagctcgggaag
gtggcgcacgcgaacccgctcgcggtgatgaacgcgatcgtgcgtcagatcgaggcgtac
acgaacatgatctcgcccgtgtgcgacgcgttcaagtacctcacggcgatggggtacgac
gtgttgacgttcgtcgtcatcgagaagctcgcggaggggcgagagaagctgaaggacgac
ggccagaacgtgtcgctgtggctcagcgcgctcgcgacgttctgcgggcacctcgcgaag
aagtacggcaacgtcgagctctccgcgctgttgcaatacctcgtgaacacgctcaaggac
aaccagagcctcgatttgctcgtcctgaaggagctcatcacgcgcatgacggggaacgaa
ccgctcgaggacatgtccgacgcgcaagtcgccgccatgtccggcggcgagacgctcaag
tccgaggcgatcaatttcaacagcgcgatggcgcccaaggtgcgagccaagggcgtcgcg
cggctgagagacgcgctgcagaggggcgcgaagggcggggactcgctcacggtgccgctg
ctgattctcatcgcgcagtgccggcagaacatcgtgttcaacacgccgtcgaagcacctg
aagctcatctctcagctgtacgacgggtgccaggagacgttctttcactactgcgacttt
ctcgcgcaggcgtacgacgacgagaagtacgcgaagatgatcccgtcgctgaaggagctc
gtgcacgactacggcatcgagcccggcgcggcgtttcacatcttccggccggtgttgaga
cacctgaagccgcgccccgcgccgtccaaggataagcccgtcgacgtttgcaacgccgcg
atcgcgctcgacatcggcggcgcgaagacgacgtggggcgaactgttagcggacgtccga
gggatgctcccggaggtgacgtggcaggcgatatccccggagttgtacttgtgcttctgg
gcgaacaccgcgtacgacttgcacgtgcccagggcgcggtacgacgcggagattgaaaag
tgccgcgcgtcgctgacggtgctcgagggcctcccgacgcgcgacgtttcgtcttccgat
ctcgcgaaacggcgcaaggagaaagaccgtctgcagacgctcgtggacacgctgcagaag
gagctggacgcgcaggagcgcgcggtgagcaagaagaccaagtcgctcatgatcgaaaaa
gacgctttcctcgtggacttgccggatatcaagtccacggtgtctgtgatcttgcagcgg
tgcgtgcttccgcggtgcgtcttctccccagcggacgccatctactgcgcgcgcttcgcc
gaacgcctccacgcgctcgacacgccgtacttcagcacggtgcagtactacaacaccgcg
ctgaaggacctgacgcagctcatcttttcgcgcaccgagtacgaagccgggaggctcggg
aagtttttgaacgagacgctgactcagctcgcgcggtggaaagcggacgagaccgcgtac
gagcgcgagtgcgcgagcaagaacgggttcaagacgacgttcaaggaaccgtccggggga
acgaacgcgaagcgggtgacgtacgaggagttcgtgaagctcgtgtacaagtggcacctt
cggctcgcgaagtgtttcgtgcactgcctggagggcagcgactacatggagattcgaaac
gcgttgatggtgttgacgaagatcgtcaaggtgttccccgcgatcactcgcatcggcggg
cacacgctgcggagagtggagaagatcaaagagagcgacgagcgcggggatctcaagacg
atcgccgcgcggtacctcgcgatgcttcagatggagcgcaaggcgtggcggccggacaac
gcgttcaatccgtacctcccgccggacccgaagcagcaggagaaggacgcggccgcgacc
gcgacctcgaagggcggcggtggcgacgaggagggcgcgatcaagcccgaggggggcggc
ggggagaagggcagcggcgcggctgcgggcgcgggcgcgggggcggcggcgaagaagaga
ggaagagccgacgccggcaaactctccgcggaggcgccggagtttacccccacgaaggac
gccgccgccgacgcggacggcggcggcggcggctcgaagaagcgcgcccgcggcgcgagg
gacgcggacgggggcaaggacgacggcaagggaggcgccaaggggaaagacgaccaaaag
tccgccaaagacgcgggcggcggcggcggcggcggcggcggtcgcggcggcggaggcggt
cgcggcggcggcgggagagagtccgagaaggagaaggaggagcgtctgcgagcggaggcg
aagagcgcgaaggagacgcgcgagcgcgaccagaagcgccggagggacgacgaggcggac
gggaagggagcgaatgactcgaacaagcgcgccaggaagggcgacggcgggacgcgcgga
cggccggattgggactcggggagggagccgggcggcggcggcggcgggcgcgggaaccgc
ggcggcggcgggggcgcgcaccgcgacgacgatcgtcgcggcggcggcggcgggagggac
cgcggcggtcctcccgggaagacgtcggagacgacggacgtgaccgtgaccgtgccgccc
ggcgtatgcgacggcgcgtcgctgcggctcaaagagatgggcggcggcgggacgccgccg
ggggacttgtacgtcaagatcgcggctgacgacatgagcgagggcgcggtcattcgacgc
gacggcgccaacttgatcagcgatctggtcgttcgcttcgagaagcgcggcgaggacacg
agcgcgcgcgtcaggacggtggagggggaacacggcaccttgaaagtgcgcgcggacgtg
gaggttgggcaggcgttgcggatcaagggaagaggcgcgccggtcaagccagggagcgag
gagagaggcgaccatctgttcgtggtgaagaagatcattcatttggaccgcggttcgggc
gacggagacgacgacgcggcgtga
DBGET
integrated database retrieval system
