Marinobacter psychrophilus: ABA45_17180
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Entry
ABA45_17180 CDS
T03980
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mpq
Marinobacter psychrophilus
Pathway
mpq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mpq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABA45_17180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpq03400
]
ABA45_17180
Enzymes [BR:
mpq01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
ABA45_17180
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
ABA45_17180
DNA repair and recombination proteins [BR:
mpq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ABA45_17180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AKO53954
UniProt:
A0A0H4I4J5
LinkDB
All DBs
Position
3787244..3788056
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGQTVRSVSVRNGRLRWPVPEDLSVRLEGEVIRSVERRAKYL
FLNLDSGSVIVHLGMSGSLRIITDDSAALTHDHVELMLHSGVRLRYNDPRRFGCWLWSSN
PNTHPLIASLGPEPLAPEFNGVYLFRRSRGKSTAVKSFIMDGHVVVGVGNIYANEALFKA
GIHPRRQAGRISLSRYHRLVEVIQETLMAAILMGGTTLRDFVNSDGQPGYFAQSLLVYGR
GGQPCSECQTTLKEIRMNQRATVYCTRCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaattgcctgaagttgaaaccacccgccgtggcatagccccccacctggaaggc
cagaccgttcgctctgtcagcgttcgtaatggtcgattgcgctggccggtgccagaagat
ctaagtgtacgattggaaggggaagtgatacgcagtgttgagcggcgcgccaaatacctg
tttctgaatctcgacagcggcagcgttattgtgcacctgggcatgtctggcagcctgcga
atcattaccgacgacagcgctgcattaacccatgatcacgtagagctgatgctgcattcg
ggtgtacgcctgagatacaacgacccacgtcgtttcggctgctggctgtggtcctcgaat
cccaacactcatccgctgatcgctagcctggggccagagccgttggcgcccgaattcaac
ggcgtctatttatttcgccgttcccggggcaaaagcactgcggtcaaatcctttattatg
gacggccatgtggtggtgggcgtgggcaacatttacgccaacgaagctctgttcaaagcc
ggcattcacccgcgacggcaagccggacgcatcagccttagccgctaccaccgattggtc
gaagtgattcaggaaaccctgatggccgccatcctgatgggtggcaccaccctgcgggac
tttgttaacagcgacggccagcccggctatttcgcacagtcgctgctggtgtacggccgc
ggcggccagccctgctccgaatgtcagactacgctgaaggaaatccgcatgaatcagcga
gcgacggtatactgcacccgctgccagcgatga
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