Marinobacter psychrophilus: ABA45_17430
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Entry
ABA45_17430 CDS
T03980
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mpq
Marinobacter psychrophilus
Pathway
mpq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABA45_17430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpq03019
]
ABA45_17430
Enzymes [BR:
mpq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABA45_17430
Messenger RNA biogenesis [BR:
mpq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABA45_17430
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
SNF2-rel_dom
Utp25_C
AAA_22
CMS1
Sacchrp_dh_NADP
NOMO1-like_2nd
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
AKO53998
UniProt:
A0A0H4I8D2
LinkDB
All DBs
Position
complement(3842675..3844009)
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AA seq
444 aa
AA seq
DB search
MSFSSLGLSEPLVRATLDQGYETPSPIQLKAIPAVLAGKDVMAAAQTGTGKTAGFVLPIL
QMLEQNPRTGKGPRVLILTPTRELAAQVHDSVNLYSRYVPTRAAVVFGGVKINPQMMKLR
KGLDVLVATPGRLMDLYQQNAVRFNEVEFLVLDEADRMLDMGFIRDIRKILAMLPAKRQS
LLFSATFSNEIRTLAKGLLNDPVQIDVAVRNTTAESVIQSVYPVDQSQKTALLSKLVRDN
SWEQVLVFTRTKHGANRLTEKLGKDGITAAAIHGNKSQGARTRALAEFKQGDIRVLVATD
IAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADELSMLVGIEKL
IKKQLPRKEVEGFEPKNHVALKPKAKADPSKARNRSGGNGGGNGRPSDKPRSFGDKPGGR
SAGRSQNGDGGQRGRSGQRQNPGA
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcttcactcggtttgtctgagccgctagtccgtgccactttggaccagggt
tatgaaaccccgtcacccattcagttaaaagccattccagcggtattggccggtaaagat
gtgatggccgccgcacaaaccggcaccggtaaaaccgccggttttgttctgccgatactg
cagatgctggaacagaacccgcgtactggcaaaggcccgcgcgtactgattctgacgcct
acccgcgaacttgcggctcaggtgcacgacagcgtgaacctctacagtcgttacgtgccc
acccgcgcggctgtcgtatttggcggtgtgaaaattaacccgcagatgatgaagctgcgc
aaagggctagacgtactggtggcaacacctggccgcctgatggacctgtatcagcagaac
gctgtgcgtttcaacgaagtagagtttctggtgctggacgaagccgaccgcatgctggat
atgggctttattcgcgatatccgcaagattctggctatgctgcctgcgaagcgccagagc
ctgctgttttctgcaaccttttccaacgaaattcgcaccctggccaagggcctgctaaac
gacccggtgcagattgatgttgcagtgcgcaacaccactgccgaaagcgttattcaatcc
gtttatccggtggatcagagccagaaaacggcgctgttgagcaagctggtgcgcgacaac
agctgggaacaagtactggtgtttacccgcaccaagcacggtgcgaaccgcctgaccgag
aagctgggcaaagacggtattaccgctgctgcgattcacggtaataagtcccagggcgcc
cgtacccgcgctttggccgagttcaagcagggtgatattcgtgtgctggtagcgaccgac
atcgctgctcgcggtttggatatcaaacagctgccccaggtggtgaactttgagttgcct
aacgtgccggaagactacgttcaccgcattggccgtaccggccgcgcaggtgaaagtggc
cacgcgttgtcgctggtgagtgctgacgagctcagcatgctggtgggtatcgaaaagctg
attaagaagcagttgccgcgcaaggaagtagaaggctttgagccgaagaaccacgtggcg
ctgaagccaaaagccaaggccgatccgagcaaagctcgtaaccgcagcggtggaaacggt
ggcggcaatggccggccaagtgataagccccgcagctttggcgataagccaggcggccgc
agcgcaggccggagccagaatggcgatggcggccaacgcggacgttcaggtcagcgccaa
aacccgggcgcctaa
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