Marinomonas profundi: J8N69_07070
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Entry
J8N69_07070 CDS
T07858
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mprf
Marinomonas profundi
Pathway
mprf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mprf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J8N69_07070 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mprf03021
]
J8N69_07070 (rpoC)
03400 DNA repair and recombination proteins [BR:
mprf03400
]
J8N69_07070 (rpoC)
Enzymes [BR:
mprf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J8N69_07070 (rpoC)
Transcription machinery [BR:
mprf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J8N69_07070 (rpoC)
DNA repair and recombination proteins [BR:
mprf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J8N69_07070 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
FTO_CTD
Motif
Other DBs
NCBI-ProteinID:
UDV04507
LinkDB
All DBs
Position
complement(1501382..1505584)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLGLLKSQGQSDEFDAIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVALSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLIMDMTLRDIERVLYFESFIVIDPGMTTLEKGQLLNDEQYFEALEEFGDEFDARM
GAEAVQMLLRDLDMPVEINSMREELNSTNSETRIKKLSKRLKLVEAFYHSGNNPEWMVLD
VLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPS
LRLHQCGLPKKMALELFKPFIFSKLELRGMATTIKAAKKMVERETPEVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMAFSDIKEVHRAYGAK
QVELHAKVKVRISQVDTTLEGEKVPSTFIADTTVGRALLFDIVPDGLPFSVVNQTMKKKA
ISNLINECYRKVGLKESCIFADQLMYTGFAYATASGSSVGVDDFVIPPEKAAIIAKAEEE
VKEIEYQYADGLVTQGEKYNKVIDLWSRTNETVTEAMMKNLAKEMTVNKAGETVEQQSFN
SVYMMADSGARGSVAQMRQLGGMRGLMAKPDGSIIETPITANFREGLSVLQYFTSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITEVDCGSTNGIFVAAMIEGGDVVVPLGQRVL
GRVVAQDVIDGKGDFVLAAGTLIDEHDVRTIEAAGVDEMIIRSVITCNTRHGVCAKCYGR
DLARGHQVNIGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQVKSAGTVRFN
KMKSIERHTGHLVVASRSSELAIADEAGREKERYKLPYGAVLSVREGDQVTAGQIVANWD
PHTHPIVSEMEGRLEFSGMEENVTIRRQSDEMTGLTTIEIMEVRDRPAAGKDLRPMIAVV
DAEGNPVLIPGTESPVQYMLPEKALLSLDHGATVKSGEVLARIPQESIGNKDITGGLPRV
ADLFEARRPKDPAVMAETSGVVSFGKETKGKIRLVITPQNGDDPVETLIPKWRQINIFDG
EEVAKGEIIADGPLSPHDILRLQGVEALADYITNEVQEVYRLQGVVINDKHIEVIVNQML
RKVEVGESGDTDLIQGDQVEFTRLLDANEKAQAEGKFPAKFERVLLGITKASLATESFIS
AASFQETTRVLTEGAVTGKKDHLRGLKENVVVGRLIPAGTGLAYHSERKRKKELALAAKE
GSSTVSASDVEEALSAALKD
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttattaggtcttctaaaatcacagggacaatctgacgagttcgatgcaatc
cgcattggcttggcgtcaccagatatgattcgttcatggtcttacggcgaagttaaaaag
ccagagaccatcaactaccgtacgttcaaaccagaacgtgacggtttgttctgtgccaaa
atctttggtcctattaaggactacgaatgcttgtgtggtaaatacaagcgtttgaaacac
cgcggtgttatctgtgagaagtgtggcgttgaagtggctctgtctaaagtgcgccgtgaa
cgcatgggtcacattgagcttgcatcgcctgttgcacacatttggttcttgaaatctcta
ccatcacgtatcggtcttatcatggatatgacgctacgtgatattgagcgagttttgtat
tttgaatctttcatcgtgattgatccaggtatgacgacgcttgaaaaaggccaattacta
aacgatgagcaatactttgaagcgctagaagagttcggtgacgaatttgatgcccgtatg
ggggccgaagcggttcagatgttgcttcgcgatttagacatgcctgtcgaaatcaacagc
atgcgtgaagagctaaacagcacgaattctgaaactcgtattaagaagctttctaagcgt
cttaagctggttgaggccttctatcattctggcaacaacccagagtggatggtgcttgat
gtgttgcctgttcttccgccagatcttcgtccattggtaccacttgaaggtggccgtttt
gcgacgtctgatttgaacgacctttaccgtcgtgtgattaaccgtaacaaccgtctaaag
cgtctattagagctatcggctcctgatatcatcgtacgtaacgaaaaacgtatgttgcaa
gaatcggttgatgccttgcttgataacggtcgtcgtggtcgcgcgattaccggttctaac
aaacgtcctctgaaatctttggctgatatgatcaaaggtaagcagggtcgtttccgtcag
aacttgctcggtaagcgtgttgactattctggtcgttctgtaatcacagtaggtccatca
ctgcgtctacatcagtgtggtctgcctaagaaaatggcacttgagctcttcaagccattc
attttctctaagcttgaacttcgtggcatggcgacgacgatcaaagcagcgaagaaaatg
gttgagcgtgaaacgcctgaagtgtgggatatccttgatgaggttatccgcgaacatcca
gtgatgttgaaccgtgcgccaacccttcaccgtttgggtatccaagcgtttgagcctatg
ttgatcgaaggtaaagcgattcagttgcacccactagtgtgtgcggcttacaacgccgac
ttcgatggtgaccaaatggcggttcacgttccattgacgattgaagcgcagctagaagcg
cgtgctttgatgatgtctacgaacaacatcctatcacctgcaaacggtgagccgatcatc
gtaccttctcaggacgttgtattgggtctgtactacatgacacgtgagaaaatcaatgcc
aaaggcgaaggcatggcattttctgacatcaaagaagtacaccgcgcgtatggtgctaaa
caagttgaattgcatgccaaagtaaaagtccgtatcagccaagttgatacgacacttgaa
ggcgaaaaagtcccttctacttttattgcagatacaacagtcggtcgcgctttgttgttt
gatatcgttcctgatggcctaccgttctccgtggttaaccaaaccatgaagaagaaagcg
atctctaacttgatcaacgagtgttaccgtaaagtcggcttgaaagagagctgtatcttt
gctgaccaattgatgtacacaggttttgcttacgcgactgcgtctggttcttctgtaggt
gtggatgacttcgttattccgcctgaaaaagccgcgatcattgccaaagcggaagaagaa
gttaaagaaatcgaataccaatacgctgatggtcttgtaacgcaaggcgagaagtacaac
aaggtaatcgatttatggtctcgtacgaacgagacagtgactgaagccatgatgaaaaac
ttggcaaaagagatgactgtcaacaaagcgggtgaaacggttgaacaacaatctttcaac
tcggtttacatgatggccgactctggtgcccgtggtagtgttgcgcagatgcgtcagttg
ggtggtatgcgtggtctgatggcgaaaccagatggttctatcatcgagacgccaatcacc
gcaaacttccgtgaaggtctgtcggtacttcagtactttacttcgactcacggtgctcgt
aagggtctagccgatacggcgttgaaaacagccaactctggttatttgacacgtcgtcta
gtcgacgtggcgcaggatttggttatcactgaagtagattgtggttcgacaaacggtatt
ttcgttgctgccatgattgaaggcggtgatgtcgttgtgccactgggtcagcgagtgctg
ggtcgtgtcgtggctcaagatgttattgacggtaaaggcgatttcgttcttgcggctggt
actttgattgacgagcatgatgttcgtacgattgaagcagcgggcgtggatgagatgatt
attcgctctgttatcacatgtaatacgcgtcatggcgtatgtgctaagtgttacggtcgt
gatctggctcgtggccatcaggtgaacattggtgaagcgattggtgttgttgcagcacaa
tctatcggtgaaccgggtacacagttaaccatgcgtaccttccacatcggtggtgcggcg
tctcgtgcgtcggcggtcgatagtgttcaagtgaagagtgcaggtacggtacgtttcaat
aagatgaagagtatcgagcgtcatactgggcatctggttgtggcctctcgttcttctgaa
ttggccattgccgatgaagcgggtcgtgagaaagagcgttataagcttccttacggtgcg
gtattgagtgtacgtgaaggtgatcaagtgacagcgggtcaaatcgttgcaaactgggat
ccgcatacacacccaatcgtttctgagatggaaggtcgtcttgaattcagcggtatggaa
gagaatgtcactattcgtcgtcaatctgacgaaatgacaggtctgacgacgattgaaatc
atggaagttcgtgatcgtcctgcggcaggtaaagatcttcgtccaatgattgccgttgtg
gatgcagagggtaaccctgtattgattcctggtactgaatcgccagtgcagtacatgctt
cctgagaaagcgttgttgagcctagatcatggcgcaaccgtgaaatcaggtgaggtgctt
gcgcgtattcctcaagaatctattggtaacaaagatatcaccggtggtttgccacgagtg
gctgacctattcgaagcgcgtcgtccgaaagatcctgctgttatggcggaaacgagcggt
gtggttagcttcggtaaagaaacaaaaggtaagattcgtttggttatcacaccgcaaaac
ggtgatgatccagtcgagacgttgattcctaaatggcgtcaaatcaacatctttgatggt
gaagaagtggctaaaggcgagattattgccgacggccctctaagtcctcatgacattttg
cgtcttcaaggtgtagaggctttggccgattacatcaccaacgaagtgcaggaagtatac
cgcttacaaggcgttgtgattaacgataagcacattgaagttatcgtgaaccaaatgttg
cgtaaagtagaggttggtgagtctggtgatacagatcttattcaaggtgatcaggtcgag
tttactcgcctgctagatgcaaacgaaaaagcccaagctgagggtaaattcccggctaag
tttgaacgcgtgcttctaggtatcacgaaagcttctttggctactgagtcctttatatca
gcagcgtctttccaagagacaactcgagttcttacggaaggtgcggtgacaggtaaaaaa
gatcacttacgtggcttgaaagaaaacgttgttgtgggtcgcttgataccagctggtaca
ggtttggcttaccacagtgagcgcaagagaaagaaagagcttgcgctagcagcaaaagaa
ggaagttcgaccgtcagcgcctcagatgtggaagaagcattgagtgctgcactgaaagac
tag
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integrated database retrieval system
