Marinomonas profundi: J8N69_10825
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Entry
J8N69_10825 CDS
T07858
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mprf
Marinomonas profundi
Pathway
mprf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mprf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J8N69_10825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mprf03019
]
J8N69_10825
Messenger RNA biogenesis [BR:
mprf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J8N69_10825
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
UDV02088
LinkDB
All DBs
Position
2318427..2319770
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AA seq
447 aa
AA seq
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MIPSREDLWFLPLGGTGEIGMNMNLYGHDGQWLMIDCGVSFNEPLIPDDLRTSEIVCADP
RFITEQKERLAGIVITHAHEDHVGALPFLWRRFKCPVYTTAFTAEVLRRKLAQVGLTDQV
PIIEVKANETKKIGVFNVKWLGLTHSVPEPYAMTIDTPAGKIFHTGDWKIDKQPMLGEAF
SPTAFQALAKDNILAMVCDSTNALKDGFSPSENDCYQGLLTTIRAEKNRVVVGCFSSNVA
RLVALGRVAKETGRYLALIGRSLTNMVSAARVTGHWPDDLPIIDATHLGYLPREEVLAVV
TGSQGEPRATLNRLAADNCFDLSLEADDLVIFSAMRIPGNEQAIDRLAEQFKGRKIRTLQ
AHETDLTIHVSGHPCREELKQLYTWVQPQLAIPVHGEPKHLDANADVAKLSHVPDQLVGR
NGDLYQLAPNVSIRRQQVKVGRIALLR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
ttgattccttcgcgagaagatctatggtttttacctctagggggcacgggcgaaatcggt
atgaacatgaatctttatggtcatgacggccagtggctgatgatcgattgtggtgtttcc
ttcaacgaaccgctcatacctgatgacctgcgtacttccgaaattgtctgcgccgatccg
cgctttattactgagcaaaaagagcgtttggcgggcatcgtcattactcacgcccatgaa
gaccatgtgggtgccttgccttttttgtggcgacgctttaagtgtccagtttataccaca
gcgtttaccgccgaggtgctgcgtcgcaagctggcgcaagtgggcttgaccgaccaagtg
ccgattatcgaagtgaaagcaaacgaaaccaaaaaaattggcgtgtttaatgtcaaatgg
ttggggctgactcattctgtgcccgaaccttatgcaatgacgattgacacgccagcgggg
aagatttttcatactggcgattggaaaattgataaacagcctatgcttggcgaggctttt
tctcctacggcttttcaggcgttagccaaagacaatattctcgccatggtgtgtgattca
accaatgcgttaaaagacggtttttcaccgtccgaaaacgactgttatcagggcttatta
accaccattcgtgccgaaaagaatcgtgtggtggtgggttgtttcagcagtaatgtcgcc
cgtttagtggctttggggcgagtcgccaaagaaacaggtcgttatcttgcgttgatcgga
cgatcgctgaccaacatggtcagcgctgcccgagtgacaggccattggccggacgatttg
cctattatcgacgccacacaccttggctatttaccccgggaagaagtgctggcggtggtc
accggaagccaaggagagccacgggccaccttgaaccgattggccgccgataattgcttt
gacctgagtcttgaagcggacgacttggtgatttttagtgccatgcgcattccgggcaat
gaacaggccatcgatcgattagccgagcaatttaaggggcgaaaaatccgcaccttacaa
gcccatgaaaccgacttaaccattcatgtaagcggccatccttgccgcgaagagctcaaa
cagctttacacttgggtacagccgcaattggcgattccggttcatggcgagccgaaacat
ttggacgccaacgccgacgtggcgaaactcagccatgtgccggatcagttggtcggccga
aatggcgacttataccagttggcgccaaacgtcagcattcgacgtcagcaagtaaaagtg
gggcggatagcgctgcttagatga
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