Marinomonas profundi: J8N69_13625
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Entry
J8N69_13625 CDS
T07858
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mprf
Marinomonas profundi
Pathway
mprf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mprf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J8N69_13625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mprf03019
]
J8N69_13625
03400 DNA repair and recombination proteins [BR:
mprf03400
]
J8N69_13625
Enzymes [BR:
mprf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J8N69_13625
Messenger RNA biogenesis [BR:
mprf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J8N69_13625
DNA repair and recombination proteins [BR:
mprf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J8N69_13625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
TniB
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UDV02619
LinkDB
All DBs
Position
complement(2932424..2934391)
Genome browser
AA seq
655 aa
AA seq
DB search
MTPLVQGLHGVFGFTEFRQGQQQTIEQLLAGHSSLAVFPTGSGKSLCYQFTATQLPNLTL
VISPLIALMHDQLAFLTSKGIPAACLDSSQNKDESQAVMSGVQSGAIKILMISVERFKNE
RFRRFIKRIPISMLVVDEAHCISEWGHNFRPDYLKLPSYQQELAIPLVLLLTATATRRVQ
RDMAQKFAIHPEHIVQTGFYRHNLDIDLMPVQSHEKLSALKSVLNETQGASIVYVTLQKT
AEDIAHALQAEGYSATAYHAGLDSETRSTIQASFMSDKSITSKTRIIVATIAFGMGIDKA
DIRLVVHFDLPKSIENYSQEIGRAGRDNQASRCVLLASLEGLSTLENFVYGDTPEPQNID
NLLSTITEETVTGEWETQLYGLSNLTNIRSLPLKTLLVQLELLGAITPKYSYYADVRLKW
EGDRVAFASQIPAEWQAAYQALLKGIQYKKIWGTPDFDKLFNEAGLSRGNVLQMLEFAAD
QQVLTLESKGLTEVYQVHTDHFHHQTLANQLHQYVADKQSAEIARIATMIRFFQLDRCLN
NNLARYFGDQNAPEHCGHCSVCRGNVLVFQPSTTDNEQEWQNHLAEYVQEFVQHIKAKSP
TTPITAVLIARFLTGLTQPIFTKIKARQLSGFGVYETQRYVVVSDAVTQRLAHKH
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgactccactagtgcaaggattgcatggcgtatttggcttcactgaatttcgccaagga
caacaacaaaccatagaacaattgttagcaggacattcctcgctagcggtctttccaacg
ggatccggcaaatccctatgttatcaatttaccgccactcaattacccaatttaacctta
gtgatatcaccgcttattgcactgatgcacgatcaattggcgtttttaacgtcaaaaggc
attcctgcggcttgtttggattccagccaaaacaaagacgagagccaagcggttatgtct
ggtgtacaaagtggtgcgatcaagatattaatgatctcggttgaacgttttaaaaacgaa
cgtttccgacgttttatcaaacgtattccaatttctatgttagtggttgacgaagcccat
tgtatttctgaatggggtcataatttccggcctgattacctgaaactgccctcttaccaa
caagaattggccattccattagtcttactactcaccgcaacagccactcgccgagtgcag
cgcgacatggcgcaaaagtttgccattcaccctgaacacatagtgcaaactggcttttat
cgacacaacttagatattgaccttatgcccgtacaaagccatgagaaactaagcgcgtta
aaaagcgtcctaaacgaaacccaaggcgccagtattgtttatgtcacgctacaaaaaacc
gccgaagacattgctcatgcattacaagcggagggttactcagcgacagcctatcatgca
ggcttagacagtgagactcgcagcacaatccaagccagtttcatgagtgacaaaagcata
accagtaaaacccgcatcatagtggccaccattgcatttggtatgggcatagataaagcg
gatattcgcttggtcgtgcattttgatttgcccaaatcgattgaaaactacagccaagaa
attggccgcgcaggccgagacaaccaagcaagccgatgcgtgcttctggccagtttagaa
ggactaagcaccttagaaaattttgtctatggcgacacgccagagcctcagaacatagac
aatttactgagcactattacagaggaaacagtcacgggcgaatgggaaacacagctttac
ggattgtcaaatctcaccaacattcgttctttgcctttgaaaacgctattagttcagctc
gaattattgggcgcaatcaccccaaaatacagttattacgccgatgtacgcctaaaatgg
gaaggtgatagagtcgcctttgccagccaaattcccgccgagtggcaagctgcttatcag
gctttattaaaaggcattcaatacaagaaaatatgggggacacccgattttgataaactc
tttaacgaggcgggtttatcacgcggcaacgtgttgcaaatgctggaatttgccgcagat
cagcaagttcttacattagaaagcaaaggcctaacagaagtataccaagtgcataccgac
cactttcaccatcagacattagccaaccaattgcatcaatacgtggctgacaaacaaagc
gcagaaattgcgcgcattgccaccatgattcgcttctttcagttagatcgctgcctgaac
aacaacttagcacggtattttggtgatcaaaatgctcccgagcactgtggacattgctcc
gtttgtcgagggaatgttctcgttttccaaccgtcaaccacagacaatgagcaagaatgg
caaaaccacctcgcggaatatgttcaggaatttgttcaacacattaaagcgaaaagccca
accacgcccattaccgccgtgttaattgcgcgcttcttgaccggattgacacaacccatc
ttcaccaaaataaaagctcgccaactgagtggctttggcgtttatgaaacacaacgctat
gtcgtcgtatcagacgccgtcactcaacgtctggcacataaacactga
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