Marinomonas profundi: J8N69_13945
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Entry
J8N69_13945 CDS
T07858
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
mprf
Marinomonas profundi
Pathway
mprf02020
Two-component system
mprf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mprf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
J8N69_13945
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
J8N69_13945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mprf03021
]
J8N69_13945
Transcription machinery [BR:
mprf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J8N69_13945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
DUF5786
Motif
Other DBs
NCBI-ProteinID:
UDV02676
LinkDB
All DBs
Position
complement(3007685..3009175)
Genome browser
AA seq
496 aa
AA seq
DB search
MKQSLQLKLGQQLTMTPQLQQAIRLLQLSTLDLKQEIHEFLESNPLLELDDDEPLHTDIP
ASIESKSATDPLADNASGENSNEEAGVESEWTENIPEELSIDSNWDDTYQSSAAVSDHNN
SYEGESDFESRNAPAESIQDHLIWQLNLTHMSDRDIEIAYAIIECVQPDGYLSISPDDIW
ESLGTELEDLDIEEVIAVQHRLQRFDPVGVCSIDLRDCLLVQLEAFRTHPLYKSTHNLIN
HYLPLLGNRDFVQLSRKTKLKEEALKEVVSLIQQLNPRPGSLIDVDDTDYVIPDVSVKKH
QGVWQVELNNEALPPVKINETYSAMVSTVATAEDASYIKTSLQEAKWFMKSLQSRNETLL
KVASCIVNRQIEFFELGEEAMKPMVLHDVAEEVGMHESTISRVTTQKYMHTPKGIFELKY
FFSSHVNTASGGECSSTAIRAMIKKLVAEEPAKKPLSDNKLAAILADQGIQVARRTVAKY
REAMNIPPSNERKRLV
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagtctttacagttaaagctgggtcaacagctgactatgacccctcagttgcaa
caagcgattcgtttgctgcaactttctacgttggatttaaagcaagaaattcacgagttc
cttgagtctaacccactccttgagctagatgacgatgagccgctccacacagatatccct
gccagcattgaatcaaaaagtgccaccgaccctttggccgacaacgcttctggcgaaaac
agcaacgaagaagccggggtagaatctgaatggacagaaaacatcccagaagaactatcg
attgacagtaactgggacgacacctatcaaagctccgccgcggtcagtgatcacaacaat
agctatgaaggggaaagcgactttgaaagccgcaacgcgcccgccgaaagcattcaagat
catttaatctggcaactcaatctcacccatatgtcagacagagacatagaaatagcctac
gccatcattgaatgcgttcagcccgatggctacttaagcatctcccccgatgacatttgg
gaatcgttgggtactgagctagaagatttggatatagaagaagtcattgccgtccaacac
aggttacagcgctttgaccctgtgggtgtttgctcaatcgacctgcgcgattgcttactg
gttcaattagaagcttttcgaacccacccgctctataaaagcacccacaacctgatcaat
cattatctgccactgttaggcaatcgtgactttgttcaacttagccgtaaaaccaaacta
aaagaggaagcactaaaagaagttgtcagcttaatacaacaattgaaccctcgccctggc
tcactgattgatgtcgatgacaccgactatgttattcctgacgtttcagtgaaaaaacac
caaggagtctggcaagtagagctcaataacgaagcattgcctccggttaaaataaatgaa
acctattcagccatggtcagtacggtcgcaacagcggaagacgcaagctacataaaaaca
tcactccaagaagccaaatggttcatgaaaagcttacaaagccgtaatgaaaccctatta
aaagtggccagctgtattgttaatcgacaaattgaatttttcgaattaggcgaagaagcc
atgaaacccatggtgttgcatgatgtcgccgaagaagtcggcatgcacgagtcaactatt
tctcgcgtgacgacacaaaaatacatgcatacgccaaaaggcatttttgagctcaaatac
tttttttctagtcatgttaataccgcctctggaggagagtgttcttctactgcgatacgg
gctatgattaagaaactagtggctgaagagccagcaaaaaaacctttaagtgataataaa
ttagcggctattttggccgatcaaggcatacaggtcgctagacgaactgtcgccaaatat
cgtgaggcgatgaacatccctccttccaatgaacgaaaacgactggtctaa
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integrated database retrieval system
