Marinomonas profundi: J8N69_15970
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Entry
J8N69_15970 CDS
T07858
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mprf
Marinomonas profundi
Pathway
mprf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mprf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J8N69_15970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mprf03019
]
J8N69_15970
03400 DNA repair and recombination proteins [BR:
mprf03400
]
J8N69_15970
Enzymes [BR:
mprf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J8N69_15970
Messenger RNA biogenesis [BR:
mprf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J8N69_15970
DNA repair and recombination proteins [BR:
mprf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J8N69_15970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
Motif
Other DBs
NCBI-ProteinID:
UDV03028
LinkDB
All DBs
Position
complement(3429271..3431037)
Genome browser
AA seq
588 aa
AA seq
DB search
MNLKKQTLSRLGYSHYRPLQEEAIDALCSGRDVLLAAPTGGGKSLVYQAAGLMRRGVAVI
VSPLLSLMTQQVTALNAKGIHARFLNSTLNPGEQDDLIWALRHQRIDLLYLSPEKLVQPS
VIGFLHSVDISLFAIDEAHCISQWGGFFRPEYSQLGQLKTSFPGVPIIALTGTVDQTTTT
TIQESLRLTHCLVMKSSFDRANIKLHIAQKRKSKQQILYFLHHEVPGETGIIYCRSRKKT
EQLAAWLSALGLPSLSYHAAMSDADKQKNHTIFTQQYGAIMVATTAYGMGIDIPHVRFVV
HLDLPNSPEAYFQEVGRAGRDGRPAKSLLLYGLQDMLQAQQLIALQASAVEQDGQRLGSL
FRILEGRGCRRQNLLAHFGETLAACNHCDRCLTTSSEQNVTTASQKLLSLIYHTKGLQAF
SVLVAILLGKKNKAVSAIKAESSPLFGKGKELNEAQWKSLIRHLIAYEYISVGTASVFTL
HINEQSRAVLQGKAQVIIPSEHYYPALQEDQLTLNSVHWHKVLAWKYAYGKASLTDAQLR
LICLHKPRSLASLSRLTGLSKEGLADFADPLMKLIHEVDLKEVSTACS
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaagaaacaaacactttcacgtttaggttattcccattatcgtccattgcaa
gaagaggcaatcgatgccttgtgctctggtcgagacgttttgcttgcggcgccgaccggt
ggcgggaaatctctggtgtatcaggcggcaggactgatgcgacgtggcgttgcggtaatt
gtcagtccattactgtcactgatgactcagcaagtgacagcattaaacgctaaaggcatt
cacgcgaggtttctcaattctacgttaaacccaggcgaacaagatgatctcatctgggca
ttgcgacatcagcgcattgatctgctgtacctatctcccgaaaaactggttcagccgtct
gttatcggctttcttcacagtgtcgacatttcgctatttgcgatcgacgaagcgcattgt
atttctcaatggggcggctttttccggcccgaatacagtcagcttggtcagcttaaaacc
tctttccccggcgtgcctattattgcgctcaccggaaccgttgatcaaacaacgacgaca
accattcaggagtcgttacgacttacccattgcttggtaatgaaaagcagctttgatcgt
gccaacattaagctgcatattgcacaaaaaagaaaatctaaacagcaaattttgtatttt
ttgcatcatgaagtgccaggcgaaacgggcattatctactgtcgttcaaggaagaaaaca
gaacaattagcggcttggttatcagccttgggattgcctagcttgagttaccacgccgcg
atgagtgacgcggacaagcaaaaaaaccataccatttttacccagcaatatggcgctatt
atggtggcaaccacggcttatgggatgggaatcgatattcctcatgttcgatttgtggtt
catttagatttaccgaatagcccggaagcctattttcaagaggtcggcagagcagggcga
gatgggcgtcccgccaaatctctattgctgtatggtttacaagacatgcttcaagcacag
cagcttattgctctacaagcttccgctgtcgagcaagacggtcagcgcctcggtagtcta
ttccgtattttagaaggaagaggctgccgtcgtcagaatttgttggcgcattttggcgaa
acgcttgcggcttgcaatcattgtgatcgctgccttaccacttcgtcagagcagaatgta
acaacggccagtcaaaaactcttatcactgatttatcataccaagggtcttcaagctttt
tcagtgctcgttgctattttgctaggtaagaaaaacaaagctgttagtgcaataaaggcg
gaatcatcgcctttatttggtaaaggcaaagaattaaatgaagcccagtggaaatcgctc
attcggcatttaatcgcctatgaatacattagtgtaggaaccgcaagtgtttttacgctg
cacattaatgagcaatctcgagcggttttacagggcaaagcacaggttattattcccagt
gagcactattaccccgcgctgcaagaagatcaattgacacttaatagtgtgcattggcat
aaggtgttggcttggaaatatgcttacggaaaagcaagcttaacggatgctcagcttagg
ctgatttgtttgcataagccccgctccctcgcgtcattaagccgcttgactgggctgtca
aaagaaggcttagctgactttgccgatcccttaatgaagcttattcacgaggttgattta
aaagaggtcagtactgcatgctcttaa
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