Marinomonas profundi: J8N69_16670
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Entry
J8N69_16670 CDS
T07858
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
mprf
Marinomonas profundi
Pathway
mprf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mprf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J8N69_16670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mprf03019
]
J8N69_16670
Enzymes [BR:
mprf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J8N69_16670
Messenger RNA biogenesis [BR:
mprf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J8N69_16670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UDV03161
LinkDB
All DBs
Position
complement(3571833..3573200)
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AA seq
455 aa
AA seq
DB search
MENQTQEAQAETTAKPKRTRRPNKRPRNNDDSPVSAQADTPTSNDSNETKPAGNTNAKIW
SIDDFPVAEVEGKLRFHDLNLPDRVIKSIAEMGFEYCSEIQAETLPMTLLGYDIIGQAQT
GTGKTAAFLIAMISDFLDYPLEEKRANNFARGLIIAPTRELAIQIADEAIKLTSNCHLNV
VTLVGGLSYEKQKIALETENVDILVATPGRLLDFARSRKVQLGKVECLVLDEADRMLSMG
FIPDVKSIIRMTPHKELRQTMLFSATFPKDIQALAQQWTYCPKEVSVVPKEATNQNIDQV
IYTVEADQKWPVLKQLINENGGQRTIIFANRRDETRDLYERLRKANINCAILSGEVAQDK
RVKTLNNFKEGIIQVLVATDVAGRGIHVDNVELVVNYSLPEDPEDYVHRIGRTGRGGEMG
KSVSFASEDDAFMIPEIERVVGESIRCEYMVDTSR
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaccaaactcaagaagcacaagcagaaaccaccgcaaaacctaagcgtactcgt
cgccctaataagcgcccaagaaataatgatgacagcccagtaagtgcccaagcggatacg
ccaaccagcaatgatagcaatgagacaaagcctgctgggaatacaaacgctaaaatttgg
tctatagacgattttccggttgctgaagtagaaggtaagttgcgttttcatgatttaaac
cttcctgatcgagtgatcaagtccattgctgaaatgggatttgaatactgtagtgaaatt
caagctgaaaccttgccgatgaccttgcttggttatgacattattggacaagcacagacg
ggcacgggaaaaaccgcggcttttttgatcgcgatgatcagtgattttctggattaccct
cttgaagaaaagcgcgcgaacaattttgcgcgtggtttgattatcgccccgactcgtgaa
ttggcaatacagattgctgatgaagcgattaagcttacttcaaactgccatttgaatgtg
gttactttggtcggtggtttaagttatgaaaaacaaaaaatcgctttagaaaccgaaaat
gtggatattttggtggcaacaccagggcgtttgttggactttgctcgcagtcgcaaggtg
caattgggtaaagtagagtgtttggtgctggatgaggccgatcgcatgctgtcaatgggg
tttattccggatgtgaaaagtattatccgcatgacgccgcacaaagaactaagacaaacc
atgttgtttagcgcgactttcccaaaagatattcaagcgcttgcacagcagtggacctat
tgccctaaagaagtgtctgtggtgccaaaagaagcgaccaatcagaacattgatcaggtg
atttataccgttgaagccgatcagaaatggccggtattaaaacagttgattaatgaaaat
ggtggtcaacgcacaattatttttgctaaccgccgtgatgaaacgcgtgatttgtatgag
cgtttgcgtaaggcgaatattaattgtgcaattttgtcgggtgaagtggcgcaagataag
cgagtgaaaaccttgaataattttaaagaaggcattattcaagtgttggttgcaaccgat
gtggcagggcgtggtattcacgtcgataatgtagagttagttgtcaattattcattacca
gaagaccctgaggattatgtgcatcgcattggtcgtacgggtcgtggcggcgaaatgggt
aaatcagtcagtttcgccagcgaagacgatgcctttatgatcccagaaattgaacgagtc
gtcggcgaaagtattcgctgtgaatatatggttgatacgtctcgataa
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