Marinomonas profundi: J8N69_16695
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Entry
J8N69_16695 CDS
T07858
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mprf
Marinomonas profundi
Brite
KEGG Orthology (KO) [BR:
mprf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mprf03032
]
J8N69_16695 (topA)
03400 DNA repair and recombination proteins [BR:
mprf03400
]
J8N69_16695 (topA)
Enzymes [BR:
mprf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
J8N69_16695 (topA)
DNA replication proteins [BR:
mprf03032
]
Prokaryotic type
DNA Topoisomerases
J8N69_16695 (topA)
DNA repair and recombination proteins [BR:
mprf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
J8N69_16695 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_4
Ribosomal_L10
Motif
Other DBs
NCBI-ProteinID:
UDV03166
LinkDB
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Position
complement(3576991..3579618)
Genome browser
AA seq
875 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDFVVKSSVGHIRDLPTGTTATSTPQERAKQAALTRKM
SPEEKLKHKSSKSRQQLISRMGVDPESNWKARYEILPGKEKVVDELKRLAKNADTIYLAT
DLDREGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIKAAFETPSELDMNRVNAQQARRF
LDRVVGFMVSPLLWSKVARGLSAGRVQSVAVRLIVEREKEIRAFVPDEFWELDAMLATPS
KEVIKFEAAKYQDKEYRPVNKAQSDEHLARLAGAKYLVDSREDKPTSSKPSAPFITSTLQ
QAASTRLGYGVKKTMMLAQRLYEGGYITYMRTDSTNLSVDAVETLRGYILSNFGEAYIPE
EPIRYTSKEGAQEAHEAIRPSDVSIRVDDLQGMEKDAHRLYDLIRSQFMACQMTPALYTS
TTITVTSGDYEFKAKGRILRFDGYTRAMQTVAKKGEDNILPDVGQGEYLDLKELLPEQHF
TKPVARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGDIVTERL
VDSFNSLMNFSFTAQMEEQLDDIAEGHKDWIKTLNAFYKDFSSVLAKAESPDGGMMLNEP
TPTDIECPTCSRPMQIRTASTGVFMSCSGYVLPPKERCKATINLVRGDEVVAVDDEEGES
KALINKHRCKICGSAMDSYLMDEHRKLHVCGNNPACSGYEVEAGAFKIKGYDGPTLECDK
CGSEMQLKTGRFGKYFGCTSDDCKNTRKLLKSGEAAPPKMDPVPMPDLACQKVEDHYVLR
DGATGLFLAASQFPRKRETRAPLVEELLPYMDQIDPKYHFFAKAPRKDAEGRPAIIRYSR
KTKEQYVMTEEEGKPTGWKAFYVGSKWVIEEGKKK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaatcactggttatcgtggagtcgccagcaaaggcgaaaaccatcaataaatac
ctaggcaatgactttgttgtcaaatcgagtgtaggacacatccgagacttgccaacaggt
actactgccacctctacgcctcaagagcgagcaaagcaggctgctttgacgcgtaaaatg
agtccggaagaaaaacttaagcacaaaagtagtaaatctcggcagcagttaatttctaga
atgggtgtggatccagaaagtaactggaaagcacgctatgaaattttgccaggcaaagaa
aaagtcgtcgatgaattgaagcggctagccaaaaacgctgacaccatctatctcgcaacc
gatttggatagagagggagaggcgattgcttggcacttgcgagaggctattgggggtgac
gacagtcgctataaacgcgttgtatttaacgaaatcaccaaaaaagccattaaagccgct
tttgaaacaccctctgaactagacatgaatcgggtgaacgcgcaacaagcgcgacgcttt
ctggatcgtgtggttggctttatggtgtcgcctttgctttggtcaaaagtggcgagaggg
ctttctgccggtcgagttcagtcggttgcggtgcgtctgatcgttgaacgcgaaaaagaa
attcgtgcttttgtgccagatgagttctgggaactggatgccatgttggcgacgccatcg
aaagaggtgatcaagttcgaagccgcaaaatatcaagacaaagaatatcgtcctgtcaat
aaagcgcaatctgacgagcatcttgctcgtttagccggtgccaaatatctggttgatagc
cgagaagacaagccgacaagcagtaaaccatcggcgccttttattacctctacgctgcag
caagcggccagtacgcgtttgggttatggcgttaagaaaaccatgatgctggcgcagcgt
ttatatgaaggtggttatataacgtatatgcgtactgactcgaccaatttgagtgtcgat
gcagtagaaacgttgagaggttatattctttctaactttggtgaagcgtatataccagaa
gaaccgattcgctataccagtaaagaaggcgctcaagaagctcacgaagccatccgacct
tcggatgtgagtattcgtgtggatgacttgcaaggcatggaaaaagacgctcaccgctta
tatgacttgattcgtagtcaattcatggcgtgtcaaatgactccggcgctctatacctct
acaacgattaccgtgaccagtggcgattatgagtttaaggccaaggggcgtattttgcgt
tttgatggttacactcgcgccatgcagacagtagcgaaaaaaggcgaagacaatatcttg
ccagatgtagggcaaggagaatatctggatcttaaagagttgttgcctgagcagcatttc
accaaacctgtggcgcgttttagcgaagcaagcttggttaaagaacttgagaagcgcggc
attggtcgtccgtcgacatacgcttctatcatttctacgattcaagatcgtggttatgtg
cgcgttgagaatcgtcgcttttacgctgaaaaaatgggcgatattgtgactgagcgcttg
gttgatagctttaattctttaatgaatttcagttttacagcgcaaatggaagagcaattg
gacgatattgcggaaggccataaagactggattaaaacgctgaatgcgttttataaagat
ttcagctccgtgcttgcgaaagccgagtcgccagatggcggcatgatgctaaatgagccc
acaccgacagacattgagtgtccaacctgttctcgtccgatgcagattcgtaccgccagt
acgggcgtctttatgtcttgttctggttatgtgctgccaccgaaagagcgttgtaaagca
acgattaaccttgttcgtggcgatgaagtggttgcggtagacgatgaagagggcgaatct
aaagcgctcatcaataagcatcgctgtaaaatctgtggctcggctatggacagctacttg
atggatgagcaccgcaaactgcatgtttgtggtaataatccggcttgctctggttacgaa
gtggaagcgggtgcgtttaagattaaaggctacgacggtccgacgcttgaatgtgataag
tgtggctctgaaatgcagctcaaaacaggtcgttttggtaagtatttcggttgtaccagc
gatgactgtaaaaacacccgtaaactgctgaaaagtggtgaagccgcgccgccaaaaatg
gatcctgtgcctatgcctgatctggcgtgtcaaaaagtagaagaccactatgtgcttcga
gatggtgccactggtttgttcttggcggccagtcaattcccgcgtaaacgggaaactcgt
gcgcccttggtggaagagttattgccttatatggatcaaatcgatcctaagtatcacttt
tttgcgaaagcgcccaggaaagatgctgaagggcgccccgctattattcgctacagccgt
aagacaaaagagcagtatgtcatgacggaagaagaaggcaaaccaacgggctggaaggcg
ttttatgttggttctaagtgggtgatcgaagagggtaagaaaaaatga
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