Micromonospora profundi: Q3V37_02595
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Entry
Q3V37_02595 CDS
T09358
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mprn
Micromonospora profundi
Pathway
mprn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mprn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Q3V37_02595 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mprn03400
]
Q3V37_02595 (mfd)
Enzymes [BR:
mprn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q3V37_02595 (mfd)
DNA repair and recombination proteins [BR:
mprn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Q3V37_02595 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WLS46195
UniProt:
A0AAJ6HX84
LinkDB
All DBs
Position
complement(602078..605701)
Genome browser
AA seq
1207 aa
AA seq
DB search
MLTGLFSAALADPGLARARDLARSGAAQVDGLDITAPAALRPFAVAAVAADNEGAGRPVL
AVTATTREADDLAAALGGLLPADQVVVFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPA
SADAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEPVQLAAGEEADLEEVARRLTDMAYARV
DLVTKRGEYAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIEQVPLLWAPP
CRELLLTPAVRDRAAALAQEHPELAEILDKLAEGIPVEGMESLAPVLVGPDSLELLLDAM
PAGTHVLLCDPERIRTRAHDLVRTSEEFLQASWAAAAVGGQAPVDVGAAAFRTLAEVRAT
AGRLGQPWWTLSPFGLVEAETAETRQPWEDAPEQASVTPDDAIAVTLAAQPAPLYHGETA
RVVDDIKRWAGEGWSVALVFEGHGPAQRAVEVLRDAGLGARLTEEVPTAPAPGELIVTCG
ALGSGFVDEASRFVLLTGNDVTGGRGTSTRDMRKMPSRRRNTIDPLELKAGDFVVHEQHG
IGRYVELVQRTVNGASREYLVIEYAASKRGQPGDRLFVPTDQLDQLSRYVGGEQPTLHKM
GGSDWQKSKARARKAVREIAAQLIQLYAARKASKGHAFGPDTPWQRELEDAFPWQETPDQ
LAAIDEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH
YNTFAERMNQFPVQIRQLSRFQTAKETERTLEMVADGTVDIVIGTHRLLQTATRFKQLGL
VIVDEEQRFGVEHKEHLKTLRASVDVLSMSATPIPRTLEMAITGIREMSTIATPPEERHP
VLTFVGAQDDRQVAASIHRELLRDGQVFYLHNRVESIDRAARRLRELVPEARVAVAHGQM
GEDALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQIRGRVGR
GRERAYAYFLYPPEKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQSG
HIEGVGFDLYVRMVGEAVSAFKGERPEEEVDVKIDLPVDAHLPHDYVSVERLRLEMYRKL
AEARDEERLREVVAEMTDRYGEPPAPVQNLVAVARFRLLARRYGLTDVSMQGKHVRFGPL
PLPDSKQLRLKRYHPDAVYKQATDQVSVPRPSTRRIGGEPLRDQALLEWCAQLLSDVLGA
PAVAATA
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttgctcaccggtctgttttccgccgccctggccgaccccgggctggcccgggcgcgtgac
ctggcgcgctccggtgccgcccaggtcgacggcctcgacatcaccgctcctgccgcgttg
cgtccgttcgctgtcgcggcggtagccgctgacaacgagggcgccggccggcccgtgctg
gcggttaccgccaccacccgcgaggccgacgacctggccgccgcgctgggcgggttgctg
ccggccgaccaggtggtggtcttcccctcctgggagacgctgccgcacgagcggctctcc
ccacgttcggacacggtgggccgacgcctggctgtgctgcgccggctggcgcaccccgcg
tcggccgacgcgcatggcaggaccggcccgctgcgggtggtcgtcgccccggtccgctcg
ctgctgcaaccgcagctcaaggggctcggtgacctggagccggtgcaactcgcggcgggc
gaggaggccgacctggaggaggtggcccgccggctgaccgacatggcgtacgcccgggtc
gacctggtcaccaagcgcggtgagtacgcggtgcgcggcggcattctggacgtcttcccg
cccaccgacgagcacccgtcgcgtgtcgagttctggggcgacgaggtggaggagatccgc
accttcgccgtcgccgaccagcggaccatcgagcaggtcccactgctctgggcgccgccc
tgccgcgagttgctgctcaccccggcggtgcgcgacagggctgccgcgttggcgcaggag
caccccgagctggccgagatcctcgacaagctggccgagggcatcccggtggaggggatg
gagtcgctggccccggtgcttgtcggccccgactcgctggagttgctgctggacgcgatg
ccggccggcacccacgtcctgctgtgcgacccggagcggatccgcacccgggcgcacgac
ctggtgcgtacctcggaggagtttttgcaggccagctgggccgcggccgcggtcggcggc
caggccccggtcgacgtcggcgccgccgcgttccgcaccttggccgaggtccgcgcgaca
gccggcaggctcggccagccgtggtggacgctgtccccgttcggcctggtggaagccgag
acggccgagacgcgccagccctgggaggacgcgcccgagcaggcaagcgtcacgccggac
gacgccatagcggtgaccctcgccgcccagccggctccgctctaccacggcgagaccgcg
cgggtggtcgacgacatcaagcgctgggccggcgagggctggtccgtcgcgcttgtcttc
gaggggcacggccccgcccagcgggcggtggaggtgctgcgcgacgcggggctgggcgcc
cggctgaccgaggaggtgccgaccgcgcccgcgcccggcgagctgatcgtcacctgcggc
gcgctgggcagcgggttcgtcgacgaggcgtcccgtttcgtgctgctcaccggcaacgac
gtcacaggcggtcggggcacctcgacgcgggacatgcgcaagatgccgagccggcggcgc
aacaccatcgacccgctggagctcaaggccggcgacttcgtggtgcacgaacagcacggc
atcggccggtacgtcgagctggtgcagcgcaccgtcaacggcgccagccgggaatacctt
gtcatcgagtacgcggccagcaagcgtggccagcccggcgaccggctgttcgtgccgacc
gaccagctcgaccagttgtcccgttacgtgggcggcgagcagccgaccctgcacaagatg
ggcggctcggactggcagaagtccaaggcccgggcgcgcaaggcggtccgggagatcgcc
gcgcagctcatccagctgtacgcggcccgcaaggcgtccaagggccatgcgttcggcccg
gacaccccctggcagcgggagttggaggacgcgttcccctggcaggagacgcccgaccag
ctcgccgctatcgacgaggtcaagcgggacatggagcagaccgttccgatggaccggctg
atctgcggcgacgtcggctacggcaagaccgagatcgcggtacgggcggcgttcaaggcg
gtgcaggacggcaagcaggtggcggtgctcgtgccgacgacgttgctggtgcagcagcac
tacaacacgttcgccgagcggatgaaccagttcccggtgcagatccggcagctgtcccgg
ttccagaccgcgaaggagaccgaacgcacgctggagatggtcgccgacggcaccgtcgac
atcgtcatcggcacccaccggctgttgcagaccgccacccggttcaagcagctcgggctg
gtgatcgtcgacgaggagcagcggttcggtgtcgagcacaaggagcacctgaagaccctg
cgtgcctcggtggacgtgctgagcatgtcggccaccccgatcccgcggaccctggagatg
gcgatcaccggcatccgggagatgtccacaatcgccaccccgccggaggagcggcacccg
gtgctcaccttcgtcggcgcgcaggacgaccggcaggtcgccgcgtccatccaccgcgag
ctgctccgcgacgggcaggtcttctacctgcacaaccgggtcgagtcgatcgaccgggcg
gcacgccggctgcgggagctggtgcccgaggcgcgggtcgcggtggcgcacggccagatg
ggcgaggacgccctggagaaggtgatggtcggcttctgggagaaggagttcgacgtcctg
gtctgcacgacgatcgtggagtccggcatcgacatcccgaacgccaacaccctcatcgtg
gagcgggccgacctgctcggcctggcccagctgcaccagatccgtggccgggtgggccgg
ggccgtgagcgggcgtacgcgtacttcctctacccgccggagaagccgctcaccgagcac
gcccacgagcggctggccaccatcgcccagcacaccgaactgggcgcaggcatgtacgtg
gcgatgaaggacctggagatccggggcgccggcaacctgctcggcggtgagcagtccggc
cacatcgagggtgtgggcttcgacctgtacgtgcggatggtcggcgaggcggtctccgcg
ttcaagggtgagcggccggaggaggaggtcgacgtcaagatcgatctgccggtcgacgcg
cacctgccgcacgactacgtgagcgtggagcggctgcgcctggagatgtaccgcaagctc
gccgaggcccgcgacgaggagcgtctgcgcgaggtcgtggccgagatgaccgaccggtac
ggcgagccgcccgccccggtgcagaacctggtggcggtggcccggttccggctgctggcc
cgccggtacggcctgaccgacgtgtcgatgcagggcaagcacgtccggttcggtccgctg
ccgctgcctgactcgaagcagttgcggctcaagcgctaccacccggacgcggtctacaag
caggccacggaccaggtgagcgtgcctcggccgagcacccgccggatcggtggcgagccg
ctgcgcgaccaggcgctgctcgaatggtgtgcccagttgctctccgacgtgttgggcgcc
ccggcagtggccgcgaccgcctga
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