Micromonospora profundi: Q3V37_04735
Help
Entry
Q3V37_04735 CDS
T09358
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mprn
Micromonospora profundi
Pathway
mprn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mprn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Q3V37_04735 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mprn03400
]
Q3V37_04735 (ligD)
Enzymes [BR:
mprn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Q3V37_04735 (ligD)
DNA repair and recombination proteins [BR:
mprn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Q3V37_04735 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
DUF3331
DUF5415
Motif
Other DBs
NCBI-ProteinID:
WLS46587
LinkDB
All DBs
Position
complement(1051296..1052237)
Genome browser
AA seq
313 aa
AA seq
DB search
MPGAPLKPMLAMTGPLPAGDGWAYEFKWDGIRALADISGRAQHLYARTGVEITAAYPELA
TLPEQVDDVLLDGEVVLLGEGGQPSFTALAERMHVRDRNKAARLAAVMPVTYMIFDLLRI
NGDDLTGWPYERRREALDALALGGARWAVPPVFSDGPATYEAAGEHGLEGVMAKRVDAVY
RPGVRSPDWVKVKLEVTGDFVVGGWRPGARRIGGLLVGVPGPDGRLIYRGRVGGGIGAAM
ERQLLAELEPLRSGVSPFAAGVPREDARGAIWVEPRVVVEVKYGQRTPDGRLRFPRVLRM
RPDKPPEEVDDAG
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
gtgcccggagcgccgctcaagccgatgctcgcgatgaccgggcccctccctgcgggtgac
ggctgggcctacgagttcaaatgggacggcatcagggcactcgccgacatctccggtcgt
gctcaacatctgtacgcccgtaccggcgtggagatcaccgccgcgtacccggagctggcc
accctgcccgagcaggtcgacgacgtgctgctcgacggcgaggtggtgctgttgggcgag
ggcgggcagccgtcgttcaccgcgttggccgagcgcatgcacgtccgggaccgcaacaag
gcggcacggttggcggcggtcatgccggtcacgtacatgatcttcgacctgctgcggatc
aatggcgacgacctgaccggctggccgtacgagcgccgccgggaggccctggacgcgctc
gcgctcggcggtgcccggtgggcggtgccgccggtcttctccgacggcccggccacctac
gaggcggccggcgagcacggcctggagggcgtgatggccaagcgggtcgacgccgtctac
cggccgggggtgcgctcgccggactgggtgaaggtcaagctggaggtgaccggcgacttc
gtggtgggcggctggcggccgggagcgcgccgcatcggcgggctgctggtcggcgtaccc
ggcccggacggccggctgatctaccgtgggcgggtcggcggcgggatcggcgcagccatg
gaacggcagctcctcgccgagctggagccgttgcgctccggcgtgtcaccgttcgcggcg
ggtgtgccgcgcgaggatgcccggggtgccatctgggtagaaccccgggtggtggtggag
gtgaagtacggccagcgcacccccgacggccggctgcgcttcccccgggtgctgcggatg
cgcccggacaagccgccggaggaggtcgacgatgccggctga
DBGET
integrated database retrieval system
