Micromonospora profundi: Q3V37_20060
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Entry
Q3V37_20060 CDS
T09358
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mprn
Micromonospora profundi
Brite
KEGG Orthology (KO) [BR:
mprn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mprn03016
]
Q3V37_20060
Enzymes [BR:
mprn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Q3V37_20060
Transfer RNA biogenesis [BR:
mprn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Q3V37_20060
Prokaryotic type
tRNA splicing ligases
Q3V37_20060
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WLS43695
UniProt:
A0AAJ6L0R8
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All DBs
Position
4512078..4513277
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AA seq
399 aa
AA seq
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MGFTPLAGTRAPVRVWTDPYAIEPQAAKQLRNIGALPWVQGVAVMPDVHFGKGATVGSVI
AMRQAVSPAAVGVDIGCGMSAVRTSLTAADLPDDLAGLRSAIEATIPVGFAQRDRAVDPR
RIRGLEQGGWDDFWGRFAGLDRKVAQLETRAQRQLGTLGGGNHFIEVCLEQGGDDEGRVW
LMLHSGSRNIGKELAERHIGVARGLPHNADLPDRDLAVFLAGTPEMDAYRRDLWWAQEYA
RRNRAVMVALLCGVVREQFPQVSYDEPISCHHNYVAEESYDGVDVLVTRKGAIRAGKGDL
GIIPGSMGTGSYIVRGRGNADAYCSASHGAGRRMSRAQAKRTFTRDDLVAQTAGVQCRKD
AGVIDEIPGAYKDITEVMAQQEDLVEVVAHLKQVVCVKG
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgggattcacgcccctcgccggcacccgggcacccgtccgggtctggaccgacccgtac
gccatcgagccgcaggcggccaagcagctgcgcaacatcggcgcgctgccctgggtgcag
ggcgtcgccgtgatgcccgacgtgcacttcggcaagggcgccactgtcggctcggtgatc
gccatgcggcaggccgtctcgccggccgccgtcggcgtggacatcggctgcggcatgtca
gcggtgcgtacctcgctgaccgccgccgacctgccggacgacctggccggcctgcgctcc
gcgatcgaggccaccatcccggtgggcttcgcgcagcgggaccgggcagtcgacccccgt
cggatccggggcttggagcagggcggctgggacgacttctggggccggttcgccgggctg
gaccgcaaggtggcgcagctggagacccgggcacagcggcagctcggcacgctcggcggc
ggcaaccacttcatcgaggtctgcctggagcagggtggcgacgacgagggccgggtgtgg
ctgatgctgcactccgggtcccgcaacatcggcaaggagctggccgagcggcacatcggg
gtggcccgggggctgccgcacaacgccgacctgcccgaccgggacctcgccgtgttcctc
gcgggcactcccgaaatggacgcgtaccggcgggatctgtggtgggcgcaggagtacgcg
cggcgcaaccgggcggtcatggtggccctgctgtgcggcgtggtgcgggagcagttcccg
caggtgtcctacgacgagccgatctcgtgccaccacaactacgtcgccgaggagagctac
gacggggtggacgtgctcgtcacccgcaagggcgcgatccgggccgggaagggcgacctg
ggcatcatccccgggtcgatgggcaccgggtcgtacatcgtgcggggtcggggcaacgcc
gacgcctactgctcggcgtcgcacggtgcgggccggcggatgtcgcgggcgcaggccaag
cggacgttcaccagggacgacctggtcgcgcagaccgccggtgtccagtgccgcaaggac
gccggggtgatcgacgagatccccggcgcgtacaaggacatcaccgaggtgatggcgcag
caggaggacctggtggaggtggtggcgcacctgaagcaggtggtctgcgtcaaggggtga
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