Micromonospora profundi: Q3V37_27710
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Entry
Q3V37_27710 CDS
T09358
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mprn
Micromonospora profundi
Brite
KEGG Orthology (KO) [BR:
mprn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mprn03019
]
Q3V37_27710 (hrpA)
Enzymes [BR:
mprn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Q3V37_27710 (hrpA)
Messenger RNA biogenesis [BR:
mprn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Q3V37_27710 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
NACHT
nSTAND3
SLFN-g3_helicase
AAA_30
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WLS45112
UniProt:
A0AAJ6HRR7
LinkDB
All DBs
Position
6168738..6172799
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AA seq
1353 aa
AA seq
DB search
MQNQAAAAATDPVRELHRRLTPLMFRDQRRLQRRLDGARKLRDPQRREAALAEITAEVAR
AEQRLAARRAAVPVITYPAGLPVSERKDDIAAAIRDHQVVIVAGETGSGKTTQLPKICLE
LGRGVHGLIGHTQPRRLAARTVADRIADELGTELGDVVGYKVRFTDQVSERSLVKLMTDG
ILLAELQTDRMLRQYDTLIIDEAHERSLNIDFILGYLRELLPRRPDLKVIITSATIETDR
FARHFAGPPTADEPAGVPAPVVEVSGRTYPVEVRYRPLVELAEGEEDGDSDEENVRDQIQ
AIGDAVEELAAEGPGDILVFLSGEREIRDTADALAKLVQTKRTLLGTEILPLYARLSSAE
QHRVFAAHTSRRVVLATNVAETSLTVPGIKYVVDPGTARISRYSSRLKVQRLPIEPISQA
SANQRKGRCGRTSDGICIRLYDEQDFLSRPEFTDPEILRTNLASVILQMTAIGLGDLAAF
PFIDPPDKRNITDGVNLLHELGALDPTEADPAKRLTALGRRLAQLPVDPRLARMVVEGER
NGCAAEVLVITAALSIQDPRERPAEKQAQADQAHARFADKESDFVAYLNLWRYLREQQRE
LSSSAFRRMCKAEYLNYLRVREWQDIVSQLRQVLRTPAEGERRGGRPARDTSGEADAGRN
RHAADLPEEIDTPKVHQSLLPGLLSHIGLKDAQKHEYLGARGAKFALFPGSALFKKPPRW
VMAAELVETSRLWGRIAGRVEPEWVEPLAQHLVKRSYSEPHWEKKQAAVMAYEKVTLYGV
PLVTSRKVNFGRIDPALSRELFIRHALVEGDWQTHHHFWADNKRLLGEIEELESRARRRD
ILVDDETIFGFYDQRIPADVVSGRHFDTWWKKTRREQPDLLTFTRDLLVNDGKAGVDEGD
YPDEWQAEGVTLPLTYRFEPGTPTDGVTVDIPLPLLNQVPAESFDWQVPGLREELVIALI
RALPKPIRRNFVPVPDFARAALAAITPGEEPLLDALTRQLRRMTGVTVPRDAWEPAKLPA
HLRVTFRVLGDDEKPVAEGKDLPALQRQLRQEVRQVVAAAAPEVARTGLREWSIGTLPRT
IEQVRAGYAVTAYPALVDEGATVGVRVFDSPAEAEAAQWAGTRRLLRLTVPSPARFLQGR
LSNEAKLALSRNPHGGVQQLIEDAAGAAIDRLIGDAGGPAWDAEGFAALREKVRADLVDT
VVEVMDRVRRVLAAAYTVEQRLGATRNLAVVAALADIRKQLAGLVHAGFITETGYARLPD
LLRYLTAIERRMDRLGGNPQRDRQQQDRIAVVQKEYDDLLAALPPARRQEAAVRQIRWMI
EELRVNVFAQALGTPYPVSEQRIYRAMDDAEGR
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatcaagccgccgccgccgcgaccgatccggtacgcgagctgcaccgccgcctc
actcccctgatgttccgcgaccagcgccggctccagcggcgcctggacggtgcccgcaag
ctgcgtgacccgcagcgccgggaggctgccctcgcggagatcaccgccgaggtggcgagg
gccgagcagcggctcgccgcccggcgcgcggcggtgccggtgatcacgtacccggcgggg
ttgccggtcagtgagcgcaaggacgacatcgccgccgcgatccgcgatcaccaggtggtg
atcgtggccggtgagaccggctccggcaagacgacccagctgccgaagatctgcctggag
ttggggcgtggcgtgcacggcctcatcgggcacacccagccccggcggctggcggcccgg
acggtggccgaccggatcgccgacgagttgggcaccgagctgggtgacgtggtcggttac
aaggtgcgtttcaccgaccaggtcagcgagcgcagcctggtcaagctcatgaccgacggc
atcctgctggccgagttgcagaccgaccggatgctgcgccagtacgacacgttgatcatc
gacgaggcccacgagcgcagcctcaacatcgacttcatcctcgggtacctgcgggagctg
ctgccccgacgacccgacctcaaggtgatcatcacctcggccaccatcgagaccgaccgg
ttcgccaggcacttcgccgggccgcccaccgccgacgagccggcaggcgtaccggctccg
gtggtggaggtgtccgggcggacctatccggtcgaggtgcgctaccggccgcttgtcgag
ctggccgagggtgaggaggacggcgacagcgacgaggagaacgtccgcgaccagatccag
gcgatcggggacgccgtcgaggagttggccgccgaggggcccggcgacatcctggtcttc
ctcagcggggagcgggagatccgggacaccgccgacgccctggccaagctggtgcagacg
aagcggacactgctcggcaccgagatcctgcccctgtacgcgcggctctccagcgccgag
cagcaccgcgtcttcgccgcgcacacctcgcggcgcgtggtgctcgccacgaacgtcgcg
gagacctcgctgacagtgcccggcatcaagtacgtggtggacccgggcaccgcgcggatc
tcccgctactccagccggctcaaggtgcagcggctgccgatcgagccgatctcccaggcg
tcggccaaccagcgcaagggacgctgcgggcgtacgtcggacggtatctgcatccgcctc
tacgacgagcaggacttcctgtcccgaccggagttcaccgacccggagatcctgcgcacc
aacctggcgtcggtaatcctccagatgacggctatcgggctcggcgacctggccgcgttc
ccgttcatcgacccaccggacaagcgcaacatcaccgacggcgtcaacctgctgcacgaa
ctgggcgctctggacccgaccgaggctgaccccgcgaagcggctcaccgcgctgggccgg
cggctggcgcagctgcctgtcgacccgcgactggcccggatggtggtcgagggcgagcgc
aacggctgcgccgccgaggtcctggtgatcaccgcagcgctgtccatccaggacccgcgc
gagcggccggcggagaagcaggcccaggccgaccaggcgcacgcccggttcgccgacaag
gagtcggacttcgtcgcgtacctcaacctgtggcgctaccttcgcgagcagcagcgggag
ctgtcctcaagcgcgttccgccggatgtgcaaggcggagtacctgaactacctacgggta
cgcgagtggcaggacatcgtcagtcaactgcgccaggtgctgcgtaccccggccgagggc
gagaggcgcggcggacggccggcgcgggacacctcgggcgaggcggatgccggccggaat
cggcacgcggccgacctgccggaggagatcgacaccccgaaggtgcaccagtcgctgctg
cccggcctgctgtcgcacatcggcctgaaggacgcccagaagcacgagtacctcggtgcg
cgaggcgcgaagttcgcgctctttcccggttcggcgctgttcaagaagccgccgcgctgg
gtgatggccgccgagttggtggagacgtcccggctgtggggtcggatcgccggccgggtc
gagccggagtgggtcgagccgctcgcgcagcacctggtcaagcgcagctacagcgagccg
cactgggagaagaagcaggccgcggtgatggcctacgagaaggtcaccctgtacggcgtc
ccgcttgtcacctcccgcaaggtcaacttcgggcggatcgacccggcgctgagccgggag
ctgttcatcaggcacgctctcgttgagggcgactggcagacccaccaccatttctgggcc
gacaacaagcgtctgctcggcgagatcgaggagttggagagccgcgcccgacgccgggac
atcctcgtcgacgacgagaccatcttcggcttctacgaccagcggatcccggccgacgtg
gtctccggccggcacttcgacacgtggtggaagaagacccgccgggagcagcccgacctg
ctcacgttcacccgcgacctgctggtcaacgacggcaaggcgggggtggacgagggcgac
tacccggacgagtggcaggccgagggggtgaccctgccgctcacctaccggttcgagccg
ggcacgcccaccgacggcgtcacggtggacatcccgctgccgctgctcaaccaggtgccg
gcggagagcttcgactggcaggtgccggggctgcgcgaggagcttgtcatcgcgctgatc
cgcgcgctgcccaagccgatccgccgcaacttcgtgccggtgccggacttcgcgcgggcc
gcccttgccgcgatcaccccgggcgaggagccgttgctggacgcgctcacccgccagctg
cgccggatgacaggcgtgacggtgccccgcgacgcctgggagccggcgaagctgcccgcc
cacctgcgggtcacgttccgggtgctgggcgacgacgagaagccggtcgccgagggcaag
gatctgccggcgctgcaacgtcaactccgccaggaggtacgccaggtggtggcggccgcc
gcgccggaggtggcccgtaccgggctgcgcgagtggagcatcggcacactgccacggacc
atcgagcaggtccgcgccggctacgcggtgaccgcctatccggcgctcgtcgacgagggc
gccacggtcggggtgcgggtgttcgactcccccgccgaggcggaggcggcgcagtgggcg
ggcacccgacggctgctgcggctcacggtgccctcccctgcccggttcctccagggtcgg
ctgagcaacgaggcgaagctcgcgctgagccgcaacccgcacggcggtgtgcagcaactg
atcgaggacgcggcgggcgcggccatcgaccgcctgatcggcgacgccggtgggccggcg
tgggacgccgagggcttcgccgcgttgcgcgagaaggtccgggcggacctggtcgacacg
gtggtcgaggtgatggaccgggtgcgcagggtcctcgccgccgcgtacaccgtcgagcag
cggctcggcgccacccgcaacctcgccgtggtggcggcgttggcggacatccgcaagcag
ctcgccggcctggtgcacgccgggttcatcaccgagaccgggtacgcccgcctgcccgac
ctgctgcgctacctgaccgccatcgagcgccggatggaccgcctcggcggcaacccgcag
cgcgaccgtcagcaacaggaccggatcgctgtggtgcagaaggagtacgacgatctgctc
gccgcgctgccgcccgcgcgccggcaggaagccgccgtccgccagatccgctggatgatc
gaggagttgcgggtgaacgtcttcgcgcaggcgctgggcaccccgtacccggtgtcggag
cagcggatctaccgggccatggacgacgccgagggccgctga
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