Metallosphaera prunae: DFR88_06285
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Entry
DFR88_06285 CDS
T05966
Name
(GenBank) RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
mpru
Metallosphaera prunae
Pathway
mpru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DFR88_06285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpru03019
]
DFR88_06285
Messenger RNA biogenesis [BR:
mpru03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
DFR88_06285
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
DFR88_06285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
RRP4_S1
KH_6
S1
KH_1
RRP40_S1
Motif
Other DBs
NCBI-ProteinID:
QCO30152
UniProt:
A0A4D8S3H0
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All DBs
Position
complement(1204461..1205204)
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AA seq
247 aa
AA seq
DB search
MSTENKIYLQDRTVVVPGDLIAEGNFQIPWSPYVIKQGNKYYASVIGVVEVKDSIFEVIP
LEGSHYYPRIGDTVIALVEDVELYGWTTDIKAPYSAYLPASSLLGRPANVGEDLRRYIDV
GDYVIAKVESFDRTSDPVLSVKGKGLGRVSSGTVIDILPVKVPRVVGKGKSMLETLSTET
GCDILVAQNGRVLANCPSKEKENVLIMAIRTIERESHTKGLTDRIKKLIKESLGDNSVTS
SEAQTNT
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgtccacagaaaacaagatatatctacaggataggaccgtggtagtccctggagatcta
atagctgagggaaattttcaaataccatggtctccttacgtaattaagcagggaaacaag
tactacgcttcggttattggagtagttgaggttaaggattctatctttgaagtgattcct
ctggaaggctcccactattatcccagaataggggatactgtgatagcgttggtcgaggat
gtagaactgtatggttggactactgacatcaaagctccctactctgcttacctaccagca
tcgtctcttttaggaaggccagccaatgtcggtgaagatctaaggcgttatatagatgtg
ggggattacgtgattgcgaaggttgagagctttgatagaactagcgatcctgttctatca
gtgaagggaaagggactagggagagtttcatctggtacggttattgatatccttccagtc
aaggttcctagggttgtgggaaagggaaagagcatgttggagactttgagcacagagacc
ggatgcgatatccttgtggctcagaatgggagggtactagccaactgtccatcaaaggaa
aaggaaaatgttctaataatggccatcaggaccattgagcgtgagtcccacaccaaagga
ttgactgatagaattaaaaaactaataaaagaatcactaggtgataacagtgttacaagt
tcagaagcccaaactaatacttga
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