Metallosphaera prunae: DFR88_08885
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Entry
DFR88_08885 CDS
T05966
Name
(GenBank) RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
mpru
Metallosphaera prunae
Pathway
mpru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DFR88_08885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpru03019
]
DFR88_08885
Messenger RNA biogenesis [BR:
mpru03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
DFR88_08885
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
DFR88_08885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Zn_ribbon_3
Zn_ribbon_NOB1
HVO_2753_ZBP
Zn_ribbon_8
FtrD-like
DUF3797
OB_RRP5_4th
Auto_anti-p27
Cas12f1-like_TNB
HypA
DUF5816
zf-C2HC5
Zn_ribbon_PaaD
A2L_zn_ribbon
DmmA-like_C
Motif
Other DBs
NCBI-ProteinID:
QCO31317
UniProt:
A0A4D8S308
LinkDB
All DBs
Position
1641229..1641804
Genome browser
AA seq
191 aa
AA seq
DB search
MGKQGDLTLPGDVLSVIEEFTPGEGCYELQGQVRASIIGKVFYDMINRKSNVIPEKKTFV
YKLKKAKYMYGLVTSLKEDYAVVAVSSVEERFVSPSITGYLHISQVSHKHVKSLRDAVRP
SDVIKARPISYTYPLQLSLRGKDLGVIVASCSICGTVMLKMDEEHLKCPNCGNVETRRVG
PYSVKGNGNRS
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaacagggcgatttaacgcttcctggggacgttctctccgtgatcgaggagttc
actccaggtgagggttgttacgaacttcagggtcaggtcagagcatcaatcattgggaaa
gtcttctacgacatgatcaacaggaaaagcaacgtgatccctgagaagaagacctttgta
tacaagctcaagaaggccaagtacatgtacggcctcgtcaccagcctgaaggaagattac
gcggttgtggcagtgagtagtgtagaggagaggttcgtgagcccgtcaataacgggttac
ctccacatctcgcaggtctcccacaaacacgttaagtccctacgagacgcagtgaggcca
tctgacgtgataaaggccaggccaatctcctacacctacccccttcagctctcgctcagg
ggaaaggacctcggagtgatagttgcgtcctgctccatttgcgggaccgtaatgctcaag
atggacgaagaacatttaaagtgcccgaactgtggtaacgttgagaccagaagagttgga
ccttactcggtgaagggaaatggaaatcgcagttga
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