Mycolicibacterium psychrotolerans: MPSYJ_24000
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Entry
MPSYJ_24000 CDS
T07008
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mpsc
Mycolicibacterium psychrotolerans
Pathway
mpsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MPSYJ_24000 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpsc03019
]
MPSYJ_24000 (deaD)
03009 Ribosome biogenesis [BR:
mpsc03009
]
MPSYJ_24000 (deaD)
Enzymes [BR:
mpsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MPSYJ_24000 (deaD)
Messenger RNA biogenesis [BR:
mpsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MPSYJ_24000 (deaD)
Ribosome biogenesis [BR:
mpsc03009
]
Prokaryotic type
rRNA helicases
MPSYJ_24000 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
Flavi_DEAD
adh_short
Motif
Other DBs
NCBI-ProteinID:
BBX68939
UniProt:
A0A7I7MC33
LinkDB
All DBs
Position
2407095..2408795
Genome browser
AA seq
566 aa
AA seq
DB search
MTSSDTAPDTVDLPGDTTFADLQIHPSVLQAVKDVGYESPSPIQAATIPAMLAGSDVVGL
AQTGTGKTAAFAIPILSKIDTSSRTTQALVLAPTRELALQVAEAFSRYGAHLNVNVLPVY
GGSSYGPQLAGLRRGAHIVVGTPGRVIDHLEKGTLDVSHLDYMVLDEADEMLQMGFAEDV
ERILADTPEYKQVALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYIQVSYP
RKMDALTRLLEVEQGDAMIVFVRTKQATEEVAEKLKARGFAAAAINGDIPQAVRERTINA
LKDGSIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVT
PRERHLLGAIERVTRQKLVESDLPSVDDVNERRVQKFTDSITEALAAPGIELFRKLIEGY
ARDHDVPMADIAAALALQSRDGEEFLMTEPPPEKRREKRDRPDRPDRDDRGPRKPRERRS
DLATYRIAVGKKHKVAPGAIVGAIANEGGLHRSDFGHIAIKLDYSLVELPAKLSRETLKK
LENTRIQGQLIHLEPDRGPKARRTSP
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgacctcctccgatacggccccggacaccgtggatctgcctggtgacacgacctttgcc
gacctgcagatccacccgtcggtgctgcaggccgtcaaggacgtcggctatgagtcgccc
tcacccattcaggcggcgacgatcccggcgatgctggccggctccgacgtcgtcggtctg
gcacagaccggcaccggcaagaccgcggcgttcgcgatcccgatcctcagcaagatcgac
acctccagccgcaccacgcaggcgctggtgctcgccccgacccgggaactggctctacag
gtcgccgaggcgttcagtcggtacggcgcgcacctgaacgtcaacgtgctgcccgtgtac
ggcggcagttcctacggcccgcagctggcggggctgcgacgcggcgcccacatcgtggtc
gggacgccgggccgggtgatcgaccacctggagaagggcacgctggacgtcagccacctc
gactacatggtgctcgacgaggccgacgagatgctgcagatgggtttcgccgaggacgtc
gagcgcatcctggccgacaccccggagtacaagcaggtcgcgttgttctccgcgacgatg
ccgccggcgatcaagaagatcaccgccaagtacctgcatgatccggtcgaggtgacggtc
aagtcgaagacccagaccgccgagaacatcacccagcgctacatccaggtgtcgtacccc
cggaagatggacgcgctgacccggctgctggaggtcgagcagggcgacgcgatgatcgtg
ttcgtccgtaccaagcaggccaccgaggaggtcgccgagaaactcaaggcgcgcgggttc
gcggcggcggccatcaacggcgacatcccgcaggccgtgcgtgagcgcaccatcaacgcg
ctcaaggacggctcgatcgacatcctggtcgccaccgacgtggcggcccgcggcctggat
gtcgaacgcatctcccacgtggtgaacttcgacatcccgcacgacccggagtcgtacgtg
caccggatcggacgcaccgggcgcgccggtcggtcgggtacggcgctgctgttcgtgacg
ccacgtgagcgccatctgctcggcgcgatcgagcgggtgacgcggcagaagctcgtcgaa
tccgatctgccgtcggtggatgacgtgaacgagcggcgcgtgcagaagttcaccgactcg
atcaccgaggcgctggcggcgccgggcatcgagttgttccgcaagctgatcgagggctac
gcacgcgaccacgacgtgccgatggccgacatcgccgccgcgctggcgctgcagagccgc
gacggcgaagagttcctgatgaccgagccgccgccggagaagcgccgcgagaagcgcgac
cggccggaccggcccgaccgtgacgatcgcggtccgcgcaagccccgagagcgccgcagt
gatctggcgacttaccggatcgcggtcggcaagaagcacaaggtggcgcccggcgcgatc
gtgggcgcgatcgccaacgagggtggcctgcaccgcagcgacttcggccatatcgcgatc
aagctggactactcgctggtggaattgccggccaagttgtccagggagacgctgaagaag
ctggagaacacccgaatccagggccagctgatccacctcgaacccgatcgcgggccgaag
gcacgccgcacctcgccctag
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