Mycolicibacterium psychrotolerans: MPSYJ_42220
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Entry
MPSYJ_42220 CDS
T07008
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
mpsc
Mycolicibacterium psychrotolerans
Pathway
mpsc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mpsc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MPSYJ_42220 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpsc03021
]
MPSYJ_42220 (rpoD)
Transcription machinery [BR:
mpsc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MPSYJ_42220 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_20
NUSAP
Mo25
Motif
Other DBs
NCBI-ProteinID:
BBX70761
UniProt:
A0A7I7MEL4
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All DBs
Position
4335512..4336912
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AA seq
466 aa
AA seq
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MKRTAAKTPAKKAPAKAANGSAPAKKAAKAAPAKAAKSAGRGRAKKATAATPEVADNDLA
GEDLETTDDLEAEPGEDLEVEDVELDDIEVEDTDEDTADDAEEDQSVVVVESPAAAGKDA
KAAEDDIAEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLN
AEEEVELAKRIEAGLYATQLMAELAEKGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRL
VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ
ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPIS
LDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLT
DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcgcaccgccgccaagacccccgcgaagaaggcgcccgccaaggcggccaacggc
tctgcgccggcgaagaaggcggccaaggccgcccccgccaaagcggcgaagtccgccggt
cgcgggcgcgcgaagaaggccaccgcggcgacgcccgaggtcgccgacaacgacctcgcc
ggcgaggatctggagaccactgacgacctcgaggccgagccgggcgaagacctggaggtc
gaggacgtcgaactcgacgacatcgaggtggaggacaccgacgaggacacggccgacgac
gccgaagaggaccagtccgtcgtcgtggtcgagagccccgccgccgccggcaaggacgcc
aaggcagcagaggacgacatcgccgagccgtccgagaaggacaaggcctccggcgacttc
gtgtgggacgaggaggaatccgaggcgctgcggcaggcccgcaaggacgccgagctcacc
gcgtcggccgactcggtccgcgcctacctcaagcagatcggcaaggtcgcgctgctcaac
gccgaggaagaggtcgagctcgccaagcgcatcgaggcgggtctgtacgcgacgcagctg
atggccgagctcgccgagaagggcgagaagctcccggccgcgcagcggcgcgacatgatg
tggatctgccgcgacggcgaccgcgcgaaaaaccatctgctggaagccaacctgcgcctg
gtggtgtcgctggccaagcgctacaccggccgcggcatggcgttcctcgacctgatccag
gagggcaacctcggcctgatccgtgcggtcgagaagttcgactacaccaagggctacaag
ttctccacgtacgccacctggtggatccgccaggccatcacccgtgcgatggccgaccag
gcccgcaccatccgcatcccggtgcacatggtcgaggtcatcaacaagctgggccgtatc
cagcgcgagctgctccaggacctgggtcgcgagcccacgcccgaggagctcgccaaggag
atggacatcacgccggagaaggtgctggagatccagcagtacgcgcgtgagccgatctcg
ctggaccagaccatcggcgacgagggtgattcgcagctcggcgacttcatcgaggacagc
gaggccgtggtggccgtcgacgcggtctcgttcacgttgctgcaggatcagctgcagtcg
gtgctcgagaccctgtccgagcgcgaggccggtgtggtgcggctgcggttcggtctgacc
gacggccagccccgcaccctcgacgagatcggtcaggtctacggcgtcacccgcgagcgc
atccgacagatcgagtccaagacgatgagcaagctgcgccaccccagccggtcccaggtg
ctgcgcgactacctcgactag
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