Mycolicibacterium psychrotolerans: MPSYJ_50380
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Entry
MPSYJ_50380 CDS
T07008
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
mpsc
Mycolicibacterium psychrotolerans
Brite
KEGG Orthology (KO) [BR:
mpsc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpsc03021
]
MPSYJ_50380
Transcription machinery [BR:
mpsc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MPSYJ_50380
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_Crp_2
HTH_23
GerE
HTH_3
Sigma70_ECF
MarR
MarR_2
DUF7343
HTH_31
DksA-like_N
HTH_24
DUF1492
DUF134
Trp_repressor
Motif
Other DBs
NCBI-ProteinID:
BBX71577
UniProt:
A0A7I7MIG1
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All DBs
Position
5185796..5186755
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AA seq
319 aa
AA seq
DB search
MTPADSPSTPPRANDFADVTDMFRTLRTLPIDSPEYARQRDRIITRCLPLADRIAKRFAR
RGEPFDDLQQIARMGLLHSVNRFDPDNGADFLAFAIPTMMGEVRRYFRDHTWTMRVPRRL
KDLHVRIGAVTPPLTQSLGRTPTATDLAAALDVSREEVVECLVAANAYSLRSIDAPLSDH
DKARPALTDTLGAQDAQLDTINDRESLRPLLATLSERESAVLNLRFFAGMTQSQIADQMG
MSQMHVSRILAKTLRRLREGALDERSGRVHIHPADRSRTTRSQESAAARGSRGVHAAEHF
GAGSHGGTAQHTAHSGEQL
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgacccctgccgactcgccatcgacaccgccccgggcgaacgacttcgccgacgtcacc
gacatgttccgcacgttgcgcacgctgcctatcgactcaccggagtacgcccgccagcgg
gaccggatcatcacccgctgcctccctctcgccgaccgcatcgccaagcgctttgcccgc
aggggcgagcccttcgacgatctgcagcagatcgcgcgcatggggcttctgcactccgtc
aaccgtttcgacccggacaacggcgctgactttttggccttcgcgatcccgacgatgatg
ggcgaggtccgccgctacttccgcgaccacacctggacgatgcgcgtgccgcgcaggctc
aaagatcttcacgtacgcatcggggcggtgacaccccctttgacccaatcactgggccgc
acaccgaccgccaccgatcttgcagccgcgctcgacgtgtcgcgggaagaggtcgtcgag
tgtctggtcgccgccaatgcctacagcctcaggtccatcgacgcgcccctgagcgaccac
gacaaggcccgacccgcactcaccgacacgctcggtgcacaggacgcccagttggacacg
atcaacgatcgcgaaagcctacggccactcttggcgacactcagcgaacgggaaagcgcg
gtcctcaacctccggttcttcgcgggcatgacccagtcgcagatcgccgaccagatggga
atgtcgcagatgcacgtttcccgcatcctcgccaagactcttcgaagactccgcgagggg
gcgctcgacgagcgcagcggccgagtgcacattcaccccgctgatcggtccaggacgaca
cgatcacaggaatccgccgccgcccgaggaagccgcggcgtgcatgccgctgaacacttc
ggtgccggatcacacggcgggaccgcgcagcacaccgctcacagcggtgagcagctgtga
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