Mycobacterium pseudoshottsii: MPSD_17760
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Entry
MPSD_17760 CDS
T07300
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mpse
Mycobacterium pseudoshottsii
Pathway
mpse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MPSD_17760 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpse03021
]
MPSD_17760 (rho)
03019 Messenger RNA biogenesis [BR:
mpse03019
]
MPSD_17760 (rho)
Transcription machinery [BR:
mpse03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MPSD_17760 (rho)
Messenger RNA biogenesis [BR:
mpse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MPSD_17760 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
VWA_2
AAA_22
DUF7440
Motif
Other DBs
NCBI-ProteinID:
BBA87373
LinkDB
All DBs
Position
1923318..1925261
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AA seq
647 aa
AA seq
DB search
MGALGYLAECNEPSYDVIKRGKERNSVTDTDLITAGESTDADKKSDSVTKDSSDLNTAAP
TGALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPAAAEPTPDSGEQK
SSASTEAPAVNEATKDAPQQEQNASSGDTVRRERRRSSRDSGTSSRDGADSAGESPDKRG
KRAAGGDADNNQKAPEKAQEDAKTDGGAAESGGDQGAGQQGSGGQQSRGEDDGEGRQGRR
GRRFRDRRRRGERSGDGSDAELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSM
NMVRKNGLRRGDAVTGAVRVPREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLT
PLYPNQRLRLETTTERLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNP
ECHLMVVLVDERPEEVTDMTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDV
VVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAM
VETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIV
HKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGNMDND
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
ttgggcgcactcggctatttggctgaatgcaacgaaccctcgtatgacgtaatcaagcgg
gggaaagaaaggaattccgtgactgatacggacctcatcacggctggcgaaagcaccgac
gctgataagaagtcggattccgtgacaaaagacagttccgacctcaatactgctgcgccg
accggcgcgctggccaccatggtgctgcccgaactgcgcgcgctggccaaccaagttggt
gtcaaggggacgtcgggcatgcgtaagaacgagctgatcgccgcgatccaagaatttcgg
gaccgcgccaacggcacgcccgcggccgccgagccgaccccagattccggcgaacagaag
tcctcggcgagtaccgaggccccagcggtcaacgaggccaccaaagacgctcctcaacag
gagcaaaacgcctcatccggcgacacggtgcgccgcgagcggcgcagatcctcgcgtgac
tcgggaacgtcgtcacgtgacggcgccgactcggctggcgaaagcccagataaacgcggg
aagcgggccgccggcggcgatgccgacaacaatcagaaggcgccggaaaaggctcaagaa
gacgccaagactgacgggggagcagcggagtcgggcggtgaccaaggcgccggccagcag
ggctcgggtggccagcaatcgcgcggcgaagacgatggcgaagggcggcagggccggcga
ggacgccgattccgcgaccgccggcgtcgtggggagcgctcgggtgacggttccgacgcc
gagttgcgtgaggatgacgtcgtccagccggtcgccggcattcttgacgtgctcgacaac
tacgcctttgtccgtacctccggctaccttgccggcccgcacgacgtctacgtgtcgatg
aacatggtgcgcaagaacggcctgcgccgcggcgacgcggtcaccggcgccgttcgggtt
ccgcgtgaaggcgagcagcctaaccaacgacaaaaattcaacccgctggtgcgtttggac
agcgtcaatgggggatcggtcgaggacgccaagaagcggcccgaattcggcaaactgacg
ccgctctatcccaaccagcgtcttcgcttggaaaccaccacagagcggctgaccacgcgg
gtcatcgatctgatcatgccgattggcaagggccagcgcgcgctgatcgtctcgcccccc
aaggccggtaagacgacgatcctgcaggacatcgccaacgccattaccaagaacaatccg
gaatgccacctcatggtcgtgctcgtcgacgagcggcccgaggaggtcaccgacatgacg
cgttcggtcaagggtgaggtcatcgcctcaacgttcgaccgtccgccatccgaccacaca
tcggtcgcggagctggccatcgagcgagccaagcgcctcgtggagcagggcaaagacgtc
gtggtgctgctggactccatcacccggttgggacgtgcctacaacaacgcgtcgccggca
tcgggccggattctctccggcggtgtcgactccaccgcgctgtacccgcccaagcgattc
ctgggtgcggcacgcaacatcgaagagggcggctcgctgaccatcatcgcgaccgcgatg
gtcgagaccggctccaccggtgacaccgtcatcttcgaagagttcaagggcaccggtaac
gccgagctcaagctggaccgcaagatcgccgagcggcgcgttttccccgcggtcgacgtg
aacccgtcgggtacccgtaaagatgagctgctgctctcacctgatgagttcgccatcgtc
cacaagctgcgtcgcgtgctgtccggcctggattcccaccaggccatcgacctgctgatg
tcgcagctgcgtaagaccaagaacaactacgagttcctcgtgcaggtctccaagaccaca
ccagggaatatggacaacgactag
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