Mycobacterium pseudoshottsii: MPSD_38470
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Entry
MPSD_38470 CDS
T07300
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mpse
Mycobacterium pseudoshottsii
Pathway
mpse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MPSD_38470 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpse03019
]
MPSD_38470 (rne)
03009 Ribosome biogenesis [BR:
mpse03009
]
MPSD_38470 (rne)
Enzymes [BR:
mpse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MPSD_38470 (rne)
Messenger RNA biogenesis [BR:
mpse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MPSD_38470 (rne)
Ribosome biogenesis [BR:
mpse03009
]
Prokaryotic type
rRNA processing factors
MPSD_38470 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
PCB_OB
IF2_N
Osmo_MPGsynth
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
BBA89241
LinkDB
All DBs
Position
complement(4176394..4179420)
Genome browser
AA seq
1008 aa
AA seq
DB search
MVDGAPSSDPENEPTQREDLPDRLRVHSLARTLGTSSRRVLDALSALDGRIRSAHSSVDR
VDAVRVRDLLAEQPAEEGQAEEGQQAPDAVAAEVPDAPGEPAEPESRLMLETQETVQVVE
TWVERPHYMPLFVAPQPISEPVAGDDADDESGDEGDDDEEQADRPANRRRRRGRRGRGRG
RGEQGANDGQDQPGDDGDDSPQKTGGNSTSSDDSEAQDGADSEESDNGDDDNGSADGASR
RRRRRRRRKSGAGDDGDEGPAPDDPPNTVVHERAPRSGGKSGNSDSGDDSGGNEVKGIDG
STRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPHPGSRYTQ
IAVLEDGIVVEHFVTSAASASPVGNIYLGIVQNVLPSMEAAFVYIGRGRNGVLYAGEVNW
DAAGLGGADRKIEQALKPGDYIVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGI
SRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVTRLQERWNQIEAKAVE
IKQKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDDAWDTINEYVSSVAPDLVSKL
SKYEPAVGSEGQVGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVDVNTGK
FTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEAL
ARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPHCSGRGILLHADPVDSAPTTGR
KADSGGRRNRRSKKNRAEEPSEKEAVAKVPTHAPGEHPMFKAMAASSSSEAEHGDGEVEE
SGEELTAAVDDQTAVQVALDLGETEESEETDGSDETDETDETDDFDDDSDDSDEDDDTDE
TNDTDVDADEDEDTDEDVDGDEDTEDDDELDDDLDEDDLDDDDDLDEDDDDLDDELDDDD
SDSDDEDGESELTEPAAGRPAALEVTTIAERPRRRRAAGAGGPPIHLG
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
gtggtagacggtgccccatcttcagacccggaaaacgagccgacacagcgtgaggacctg
ccggaccgcctgagagttcactcactggcgcgaacgctgggaaccagtagccgtcgggtg
ctggatgcgttgagtgcgctcgatgggcggattcgcagcgcccattccagtgtggaccgc
gtcgatgcggtccgggtgcgcgacctgctggccgagcaacctgccgaggagggccaggcc
gaggagggccagcaagctcctgacgccgtggccgctgaggtgcccgatgcgcccggcgaa
cccgccgagcccgaatcgcgcctgatgctggaaacccaggagacggtgcaggtcgtcgag
acctgggtggagcggccgcactacatgccgctgtttgtcgcaccccagccgatttcggag
cccgtcgctggcgacgatgccgatgacgagtcgggcgacgaaggtgacgatgacgaagag
caggccgaccggccggccaaccggcgccgccgccggggtcggcgcgggcgcggccgcggg
cgcggcgagcagggcgcaaacgacggtcaggaccaacccggcgacgatggtgacgattcc
ccgcagaagacggggggcaactccacgtcatcggacgacagcgaggcgcaagacggcgct
gactccgaagagtcggacaacggcgacgacgacaacggttcggccgacggcgccagccgg
cgtcggcgccggcgccggcgccgcaagtcgggtgctggtgatgacggcgacgagggtccg
gccccggatgacccgcccaacacggtcgtacacgagcgtgccccccgctccggcggcaag
tcgggcaactcggatagcggtgacgattccggtggcaacgaggtcaagggcatagacggc
tcgacacggctggaagccaagcggcagcgccgccgcgacgggcgtgacgccggacggcgc
cgcccaccggtgttgagtgaggccgagttcttggctcgtcgcgaggcggtcgagcgggtg
atggtggtgcgcgaccgggttcgcaccgagccgccccacccgggctcgcgttacacccag
atcgcggtgcttgaagacggcatcgtcgttgagcactttgtgacctcggctgcttctgcc
tccccggtgggcaacatctacctggggatcgtgcagaacgtgctgccttcgatggaggcg
gcattcgtgtatatcggtcgtggccgcaacggcgtgctctacgccggtgaagtcaactgg
gacgcggcgggcctcggcggggccgaccgcaagatcgaacaggctctcaagccaggcgac
tacatcgttgtgcaggtcagcaaggacccggtcggccacaagggtgcccgactgacgaca
caggtatcgctggcgggccgctatctggtgtacgtgccgggtgcgtcatcgaccgggatc
agccgcaagctgcccgacaccgaacgtcagcggctcaaggaaatcctgcgtgaggtggtg
ccctccgacgccggcgtgatcattcgaaccgcgtccgagggtgtcaaagaggacgacatc
cgtgcggacgtcacccggctgcaggagcgctggaaccagatcgaggccaaggccgtcgag
atcaaacagaaggccgcgggcgccgcggtagcgctctacgaagagcccgacgtgctggtc
aaggtcatccgggatctgttcaacgaagacttcgccgggctggtcgtatccggggacgac
gcgtgggacaccatcaacgagtacgtgagctctgttgcccctgatttggtttccaagctg
agcaagtacgaaccggccgtcgggtcggaggggcaggtcgggccggatgtctttgcggtg
catcgcatcgacgagcaactggccaaggcaatggatcgcaaggtgtggctgccctcgggc
ggcactctggtgatcgaccggaccgaagcgatgacggtggtcgacgtcaataccggcaag
ttcaccggttccggcggaaacctcgagcagacggtgaccaagaacaacctggaggccgcc
gaggagatcgtgcgccagctgcggctgcgcgacatcggtggcatcgtggtgatcgacttc
atcgatatggtgctggagtccaaccgtgacctggtgctgcgccggctgaccgaggcgttg
gcccgcgaccggacccgtcaccaggtgtcggaagtgacttcgctgggtctggtccaactg
actcgcaagcggttggggaccgggctgatcgaagccttctcaacctcctgtccgcactgc
agcggccgtgggattctgctgcatgccgacccggtggattcggcgccgacgactggacgt
aaagctgactcgggtggtcggcggaaccgccgatcgaagaagaaccgcgccgaagagccc
agcgagaaggaggccgtggccaaggttcccacccacgccccgggcgaacacccgatgttc
aaagccatggccgcgagttcgtcatcggaggccgagcacggtgacggggaagtcgaggag
tccggcgaggagttgaccgccgcggtcgacgaccaaaccgcggttcaggtggcccttgat
ctcggcgagaccgaagagtccgaagagaccgacgggtccgacgagaccgacgagaccgac
gagaccgacgattttgatgacgactcggacgactcggacgaggacgacgacaccgacgag
accaacgacaccgacgttgacgccgatgaggacgaagacaccgacgaggacgtcgacggg
gacgaagacaccgaagacgacgacgaactcgacgacgacctcgacgaggacgatctcgac
gacgacgacgacctcgacgaagacgacgacgacctggatgacgagctggatgacgacgat
tcggatagcgacgacgaggatggtgagagcgaactcacagagccggctgctggccgtccc
gcagccctcgaggtcaccacgattgccgagcgcccgcgccggcggcgtgcggccggcgcg
ggcggtccgcccatccatctgggctga
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